Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | RMQ71_RS13330 | Genome accession | NZ_CP135172 |
| Coordinates | 2830466..2831056 (+) | Length | 196 a.a. |
| NCBI ID | WP_005709832.1 | Uniprot ID | A0A0J6XXP0 |
| Organism | Lacticaseibacillus rhamnosus strain DS0508 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 2827946..2845403 | 2830466..2831056 | within | 0 |
Gene organization within MGE regions
Location: 2827946..2845403
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RMQ71_RS13300 (RMQ71_13300) | - | 2827946..2828044 (+) | 99 | Protein_2586 | single-stranded DNA-binding protein | - |
| RMQ71_RS13305 (RMQ71_13305) | - | 2828424..2828651 (+) | 228 | WP_012807316.1 | hypothetical protein | - |
| RMQ71_RS13310 (RMQ71_13310) | - | 2828746..2829258 (+) | 513 | WP_223804855.1 | PedC/BrcD family bacteriocin maturation disulfide isomerase | - |
| RMQ71_RS13315 (RMQ71_13315) | - | 2829386..2829472 (-) | 87 | Protein_2589 | deoxyribose-phosphate aldolase | - |
| RMQ71_RS13320 (RMQ71_13320) | ssb | 2829582..2830013 (+) | 432 | WP_005690380.1 | single-stranded DNA-binding protein | - |
| RMQ71_RS13325 (RMQ71_13325) | rpsF | 2830140..2830436 (+) | 297 | WP_005685677.1 | 30S ribosomal protein S6 | - |
| RMQ71_RS13330 (RMQ71_13330) | ssb | 2830466..2831056 (+) | 591 | WP_005709832.1 | single-stranded DNA-binding protein | Machinery gene |
| RMQ71_RS13335 (RMQ71_13335) | rpsR | 2831148..2831384 (+) | 237 | WP_003568467.1 | 30S ribosomal protein S18 | - |
| RMQ71_RS13340 (RMQ71_13340) | - | 2831778..2832284 (-) | 507 | WP_005685670.1 | type 1 glutamine amidotransferase domain-containing protein | - |
| RMQ71_RS13345 (RMQ71_13345) | - | 2832595..2834073 (+) | 1479 | WP_014568874.1 | cytochrome ubiquinol oxidase subunit I | - |
| RMQ71_RS13350 (RMQ71_13350) | cydB | 2834066..2835085 (+) | 1020 | WP_014568875.1 | cytochrome d ubiquinol oxidase subunit II | - |
| RMQ71_RS13355 (RMQ71_13355) | - | 2835125..2835319 (+) | 195 | WP_005707490.1 | hypothetical protein | - |
| RMQ71_RS13360 (RMQ71_13360) | - | 2835398..2835655 (-) | 258 | WP_015764802.1 | hypothetical protein | - |
| RMQ71_RS13365 (RMQ71_13365) | - | 2835811..2836827 (+) | 1017 | WP_014568877.1 | IS30 family transposase | - |
| RMQ71_RS13370 (RMQ71_13370) | - | 2837863..2838540 (+) | 678 | WP_014568879.1 | CPBP family intramembrane glutamic endopeptidase | - |
| RMQ71_RS13375 (RMQ71_13375) | - | 2838932..2839072 (+) | 141 | WP_014568880.1 | hypothetical protein | - |
| RMQ71_RS13380 (RMQ71_13380) | - | 2839084..2840499 (-) | 1416 | WP_015764803.1 | IS5-like element ISLrh2 family transposase | - |
| RMQ71_RS13385 (RMQ71_13385) | - | 2840696..2841388 (+) | 693 | WP_014568882.1 | CPBP family intramembrane glutamic endopeptidase | - |
| RMQ71_RS13390 (RMQ71_13390) | - | 2841704..2842033 (-) | 330 | WP_155736656.1 | hypothetical protein | - |
| RMQ71_RS13395 (RMQ71_13395) | - | 2842151..2842756 (-) | 606 | WP_223804818.1 | ABC transporter permease | - |
| RMQ71_RS13400 (RMQ71_13400) | - | 2842862..2844280 (+) | 1419 | WP_003605947.1 | IS5-like element ISLrh3 family transposase | - |
| RMQ71_RS13405 (RMQ71_13405) | - | 2844495..2845403 (-) | 909 | WP_014568886.1 | ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 20932.66 Da Isoelectric Point: 4.9056
>NTDB_id=885853 RMQ71_RS13330 WP_005709832.1 2830466..2831056(+) (ssb) [Lacticaseibacillus rhamnosus strain DS0508]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSLVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPSNAPSSNPGQ
NPAAGQNQGNNGNAANPDPFANNGKPIDISDDDLPF
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSLVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPSNAPSSNPGQ
NPAAGQNQGNNGNAANPDPFANNGKPIDISDDDLPF
Nucleotide
Download Length: 591 bp
>NTDB_id=885853 RMQ71_RS13330 WP_005709832.1 2830466..2831056(+) (ssb) [Lacticaseibacillus rhamnosus strain DS0508]
ATGCTTAACAGTGTTGCATTGACAGGTCGTTTAACCAGAGATGTTGACTTGCGCTATACGCAAAGTGGGACAGCTGTCGG
TTCATTCACTTTGGCCGTTGATCGCCAGTTCCGCAGTGCAAACGGCGAACGGGAAACCGACTTCATTAATTGTGTGATCT
GGCGTAAGTCAGCGGAGAATTTCGCTAACTTCACCAAGAAGGGATCATTGGTTGGTGTTGAAGGTCACATTCAAACACGT
ACTTACGATAATGCGCAAGGACAGAAAGTTTATGTGACTGAAGTTGTCGTTGAAAACTTTGCGTTACTGGAGTCACGGGC
AACCACCCAACAGCGGCCATCCGAACCTGCTAATCCTGCAGGTCAGGGAAATCAGAACTATGGCGGGGGACAGCAGTTTG
GCAACAACCAGCCGCAAAATCCGCCTAGCTTTGGCTCTCAAGGCGCCCCAAGTAATGCACCATCATCGAATCCGGGACAA
AACCCGGCAGCAGGTCAGAACCAAGGTAACAACGGTAATGCTGCTAATCCTGATCCATTTGCCAATAACGGCAAACCGAT
CGACATTTCCGATGATGATCTGCCATTCTAA
ATGCTTAACAGTGTTGCATTGACAGGTCGTTTAACCAGAGATGTTGACTTGCGCTATACGCAAAGTGGGACAGCTGTCGG
TTCATTCACTTTGGCCGTTGATCGCCAGTTCCGCAGTGCAAACGGCGAACGGGAAACCGACTTCATTAATTGTGTGATCT
GGCGTAAGTCAGCGGAGAATTTCGCTAACTTCACCAAGAAGGGATCATTGGTTGGTGTTGAAGGTCACATTCAAACACGT
ACTTACGATAATGCGCAAGGACAGAAAGTTTATGTGACTGAAGTTGTCGTTGAAAACTTTGCGTTACTGGAGTCACGGGC
AACCACCCAACAGCGGCCATCCGAACCTGCTAATCCTGCAGGTCAGGGAAATCAGAACTATGGCGGGGGACAGCAGTTTG
GCAACAACCAGCCGCAAAATCCGCCTAGCTTTGGCTCTCAAGGCGCCCCAAGTAATGCACCATCATCGAATCCGGGACAA
AACCCGGCAGCAGGTCAGAACCAAGGTAACAACGGTAATGCTGCTAATCCTGATCCATTTGCCAATAACGGCAAACCGAT
CGACATTTCCGATGATGATCTGCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.204 |
100 |
0.602 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
49.749 |
100 |
0.505 |