Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   K6J72_RS01110 Genome accession   NZ_AP024814
Coordinates   191768..192340 (+) Length   190 a.a.
NCBI ID   WP_221279892.1    Uniprot ID   -
Organism   Helicobacter sp. NHP19-003     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 186768..197340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J72_RS01095 (NHP190003_02210) - 187857..188858 (-) 1002 WP_221279883.1 agmatine deiminase family protein -
  K6J72_RS01100 (NHP190003_02220) tsaD 188907..189926 (+) 1020 WP_221279885.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  K6J72_RS01105 (NHP190003_02230) - 190173..191768 (+) 1596 WP_221279889.1 methyl-accepting chemotaxis protein -
  K6J72_RS01110 (NHP190003_02240) comFC 191768..192340 (+) 573 WP_221279892.1 phosphoribosyltransferase family protein Machinery gene
  K6J72_RS01115 (NHP190003_02250) - 192329..193243 (-) 915 WP_221279895.1 response regulator -
  K6J72_RS01120 (NHP190003_02260) ispF 193236..194417 (-) 1182 WP_221279898.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  K6J72_RS01125 (NHP190003_02270) thiC 194601..195935 (+) 1335 WP_221279901.1 phosphomethylpyrimidine synthase ThiC -
  K6J72_RS01130 (NHP190003_02280) - 195932..196291 (-) 360 WP_347709322.1 cytochrome c -
  K6J72_RS01135 (NHP190003_02290) folD 196350..197198 (+) 849 WP_221279903.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 21277.14 Da        Isoelectric Point: 9.9839

>NTDB_id=88581 K6J72_RS01110 WP_221279892.1 191768..192340(+) (comFC) [Helicobacter sp. NHP19-003]
MRCFSCGVWSFKPLCKHCYTELSPRLQTHRLAKTPVLSFYVYEDIELLLKSKYTLIGSRLLPLLALRLKHLLEPLLATPL
HALPIDDHIKRGYSHTAAIARALCAHSPCKVLYNRLRATKDITYAGQSLEFRKQNPKGFVFRGDPSLAYFLVDDVLTTGT
TLCQAIQTLRGAGAKVAFALVLAKVQSLSF

Nucleotide


Download         Length: 573 bp        

>NTDB_id=88581 K6J72_RS01110 WP_221279892.1 191768..192340(+) (comFC) [Helicobacter sp. NHP19-003]
ATGCGCTGTTTTAGCTGTGGGGTGTGGAGCTTCAAGCCTCTTTGCAAGCACTGTTACACCGAGCTATCTCCACGCCTCCA
AACCCACAGGCTAGCTAAAACCCCTGTCCTTAGCTTTTATGTCTACGAAGACATTGAATTGTTGTTAAAAAGCAAATACA
CCTTGATCGGCAGCCGCCTCTTGCCCCTCTTAGCCTTGCGTCTAAAACACTTATTAGAGCCCCTCTTAGCCACCCCCCTT
CATGCGCTGCCCATTGATGACCACATTAAAAGGGGTTATTCGCACACCGCCGCCATCGCCCGCGCGCTTTGTGCCCACAG
CCCCTGCAAGGTGCTTTACAATAGATTACGCGCCACAAAAGACATCACCTACGCCGGGCAGAGCTTAGAGTTTCGCAAGC
AAAACCCTAAGGGCTTTGTCTTTAGGGGCGATCCGAGTTTGGCTTATTTTTTAGTGGATGATGTGCTCACCACAGGCACG
ACCCTATGCCAAGCGATCCAAACCCTCAGGGGGGCTGGGGCTAAAGTGGCGTTTGCGCTTGTGCTTGCCAAAGTCCAATC
TTTAAGCTTCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(150-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

49.198

98.421

0.484

Multiple sequence alignment