Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   BIV20_RS04575 Genome accession   NZ_CP135164
Coordinates   908135..908839 (-) Length   234 a.a.
NCBI ID   WP_075718528.1    Uniprot ID   -
Organism   Roseburia sp. 499     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 903135..913839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BIV20_RS04555 (BIV20_04560) - 903445..904359 (+) 915 WP_075718520.1 sugar phosphate nucleotidyltransferase -
  BIV20_RS04560 (BIV20_04565) - 904440..905495 (+) 1056 WP_334309563.1 aminoglycoside phosphotransferase family protein -
  BIV20_RS04565 (BIV20_04570) galE 905643..906659 (+) 1017 WP_075718524.1 UDP-glucose 4-epimerase GalE -
  BIV20_RS04570 (BIV20_04575) - 906742..908133 (-) 1392 WP_075718526.1 HAMP domain-containing sensor histidine kinase -
  BIV20_RS04575 (BIV20_04580) scnR 908135..908839 (-) 705 WP_075718528.1 response regulator transcription factor Regulator
  BIV20_RS04580 (BIV20_04585) - 909002..909757 (+) 756 WP_075718530.1 ABC transporter ATP-binding protein -
  BIV20_RS04585 (BIV20_04590) - 909754..910476 (+) 723 WP_075718532.1 ABC transporter permease -
  BIV20_RS04590 (BIV20_04595) - 910473..911243 (+) 771 WP_075718534.1 ABC transporter permease -
  BIV20_RS04595 (BIV20_04600) - 911249..911533 (+) 285 WP_075718536.1 hypothetical protein -
  BIV20_RS04600 (BIV20_04605) - 911647..912813 (+) 1167 WP_075718538.1 cell wall hydrolase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26596.72 Da        Isoelectric Point: 4.9550

>NTDB_id=885784 BIV20_RS04575 WP_075718528.1 908135..908839(-) (scnR) [Roseburia sp. 499]
MDFEYLKRKRILLVDDEQELLNMVVSILKEEGFCNIATAKTVKEALDLADSFAPELAILDVMLPDGNGFSLMEQLKKKSE
YPIFFLTARGEDEDKFQGFGLGADDYVVKPFLPKELTFRIMAILRRSYKEENPLVTLHDSEIDFDRAEIIKNGEHIPLTA
KEHDILSVLYRNAGRIVTIDSLCEAAWGDNPYGYENSLMAHIRRIREKIELNPSRPVSLITVKGLGYKLVIGGK

Nucleotide


Download         Length: 705 bp        

>NTDB_id=885784 BIV20_RS04575 WP_075718528.1 908135..908839(-) (scnR) [Roseburia sp. 499]
ATGGACTTTGAATATTTAAAACGTAAACGCATACTGCTTGTTGATGATGAGCAGGAGCTTCTAAATATGGTAGTATCTAT
TTTAAAAGAGGAAGGATTTTGTAATATTGCAACCGCTAAAACTGTGAAAGAAGCACTTGATTTAGCCGACAGTTTTGCAC
CTGAGCTTGCTATCCTTGATGTAATGTTACCAGACGGCAACGGCTTTTCTTTAATGGAACAATTGAAAAAAAAGAGCGAA
TATCCAATATTCTTTTTGACTGCCCGTGGCGAAGACGAAGACAAATTTCAGGGTTTCGGACTCGGTGCTGACGATTATGT
AGTGAAGCCATTTCTTCCAAAAGAATTGACTTTTCGCATTATGGCAATTCTACGCAGAAGTTATAAAGAGGAAAATCCTC
TTGTGACATTGCATGACAGCGAAATTGATTTTGACCGCGCCGAAATAATTAAGAATGGAGAACATATCCCTTTAACAGCG
AAAGAACACGATATTCTTTCTGTCCTATATCGCAACGCAGGTCGCATTGTAACCATTGACTCTTTATGCGAAGCTGCTTG
GGGAGACAATCCTTATGGATATGAAAATTCTCTGATGGCTCATATTCGCCGTATCCGTGAAAAGATAGAACTAAATCCTT
CACGCCCGGTATCCCTAATTACAGTCAAGGGATTGGGATACAAACTGGTCATAGGAGGAAAATGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(153-229)

Response regulator receiver domain (Response_reg)

(11-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

50.885

96.581

0.491
  vicR Streptococcus mutans UA159

37.555

97.863

0.368