Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   RQL82_RS02030 Genome accession   NZ_CP135159
Coordinates   428560..429189 (-) Length   209 a.a.
NCBI ID   WP_206241587.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AR3651     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 423560..434189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RQL82_RS01995 (RQL82_02000) mlaE 423893..424669 (+) 777 WP_002117010.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  RQL82_RS02000 (RQL82_02005) - 424669..425349 (+) 681 WP_005067241.1 outer membrane lipid asymmetry maintenance protein MlaD -
  RQL82_RS02005 (RQL82_02010) - 425376..426017 (+) 642 WP_002116826.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  RQL82_RS02010 (RQL82_02015) - 426029..426316 (+) 288 WP_005078357.1 STAS domain-containing protein -
  RQL82_RS02015 (RQL82_02020) - 426389..427402 (-) 1014 WP_002116978.1 magnesium and cobalt transport protein CorA -
  RQL82_RS02020 (RQL82_02025) - 427561..428142 (+) 582 WP_329760187.1 TIGR00730 family Rossman fold protein -
  RQL82_RS02025 (RQL82_02030) mutT 428157..428558 (+) 402 WP_329760188.1 NUDIX domain-containing protein -
  RQL82_RS02030 (RQL82_02035) comF 428560..429189 (-) 630 WP_206241587.1 ComF family protein Machinery gene
  RQL82_RS02035 (RQL82_02040) recG 429182..431227 (-) 2046 WP_329760189.1 ATP-dependent DNA helicase RecG -
  RQL82_RS02040 (RQL82_02045) - 431248..432063 (+) 816 WP_329760190.1 NAD-dependent epimerase/dehydratase family protein -
  RQL82_RS02045 (RQL82_02050) - 432143..433126 (+) 984 WP_025468463.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24563.69 Da        Isoelectric Point: 9.8206

>NTDB_id=885731 RQL82_RS02030 WP_206241587.1 428560..429189(-) (comF) [Acinetobacter pittii strain AR3651]
MFNFLNFQHLIQLFSLCSLCELDTREKYSLCKDCWEQLPWLKQTIQRNNQSVLVACNYAYPVNRIIQQFKYEQKLHYQIL
LGEILKQLKFPKVQAIVPMPISNQRLIERGFNQSLLLANILSRHLKIPVWQPIQRLNEHSQKGLTRLERFENIEQQFLPH
HQEKRRYRRVLIIDDVITTGSSVHALSQALKQLGCTSIHTACLAATPKS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=885731 RQL82_RS02030 WP_206241587.1 428560..429189(-) (comF) [Acinetobacter pittii strain AR3651]
ATGTTTAATTTTTTAAACTTCCAGCATCTTATTCAGTTATTTTCACTTTGCTCATTGTGCGAGTTAGACACGCGAGAAAA
ATACTCGCTCTGTAAAGACTGTTGGGAACAGCTACCTTGGCTTAAACAAACGATTCAACGTAATAATCAATCTGTTCTTG
TGGCTTGTAATTATGCTTATCCGGTTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAGTTACATTATCAAATATTA
TTAGGTGAAATTTTAAAACAATTAAAATTTCCCAAGGTACAAGCTATTGTACCCATGCCTATTTCCAATCAACGTTTAAT
CGAGCGTGGTTTCAATCAATCATTACTACTTGCCAATATCTTAAGCAGACACTTAAAAATACCTGTTTGGCAACCAATCC
AACGTTTAAACGAGCACTCTCAAAAAGGACTTACTCGGCTAGAACGCTTTGAAAATATAGAACAACAATTTTTACCCCAT
CATCAAGAGAAACGACGTTATCGCCGCGTTCTCATTATTGATGACGTGATAACCACGGGAAGCTCTGTTCATGCGCTCAG
TCAGGCACTTAAACAATTAGGCTGCACATCCATTCATACGGCGTGCCTAGCAGCAACGCCGAAGAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

83.254

100

0.833
  comF Acinetobacter baumannii D1279779

82.297

100

0.823