Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   RQL82_RS01640 Genome accession   NZ_CP135159
Coordinates   348062..348535 (+) Length   157 a.a.
NCBI ID   WP_284090635.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AR3651     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 343062..353535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RQL82_RS01615 (RQL82_01620) spoT 343524..345629 (-) 2106 WP_002116807.1 RelA/SpoT family protein -
  RQL82_RS01620 (RQL82_01625) - 345655..345800 (-) 146 Protein_310 hypothetical protein -
  RQL82_RS01625 (RQL82_01630) rpoZ 345839..346117 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  RQL82_RS01630 (RQL82_01635) gmk 346190..346819 (-) 630 WP_002116973.1 guanylate kinase -
  RQL82_RS01635 (RQL82_01640) ispH 346942..347892 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RQL82_RS01640 (RQL82_01645) fimU 348062..348535 (+) 474 WP_284090635.1 pilus assembly FimT family protein Machinery gene
  RQL82_RS01645 (RQL82_01650) pilV 348529..349089 (+) 561 WP_202744830.1 type IV pilus modification protein PilV Machinery gene
  RQL82_RS01650 (RQL82_01655) pilW 349089..350090 (+) 1002 WP_284090634.1 PilW family protein Machinery gene
  RQL82_RS01655 (RQL82_01660) pilX 350087..350896 (+) 810 WP_002117088.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16940.65 Da        Isoelectric Point: 7.7942

>NTDB_id=885724 RQL82_RS01640 WP_284090635.1 348062..348535(+) (fimU) [Acinetobacter pittii strain AR3651]
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDGNQRDLINTLSEAKSQAILGRQDVSINLNSTVLNTPT
SLNWKADSNNSLELKNIAADGTQSSLTATTLTFNANGVITNITQDTLLSICNSKINKKKILILTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=885724 RQL82_RS01640 WP_284090635.1 348062..348535(+) (fimU) [Acinetobacter pittii strain AR3651]
ATGAGGGGAATTATTCCGCAAGATGGGTTCACCTTGGTTGAGCTTATGGTGACGATTGCGGTCATGGCTATTATTGCGAT
GATGGCTGCACCATCTATGTCGAATTTATTAGAAAGCAAACGACTAGATGGAAACCAACGAGATCTAATCAATACTTTAT
CGGAAGCAAAGAGCCAAGCCATACTTGGTCGACAAGACGTTTCTATCAATCTGAATTCAACGGTTTTAAATACTCCCACT
TCCTTGAATTGGAAAGCTGATTCCAATAACAGTCTTGAACTTAAAAATATCGCTGCTGATGGTACGCAGAGTTCATTAAC
AGCGACGACTTTAACTTTTAATGCGAATGGGGTGATAACCAATATCACCCAAGATACACTTTTATCTATTTGTAATTCAA
AAATAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

87.898

100

0.879