Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   RNZ43_RS15660 Genome accession   NZ_CP135143
Coordinates   3129395..3129535 (-) Length   46 a.a.
NCBI ID   WP_003152043.1    Uniprot ID   A3KLB4
Organism   Bacillus velezensis strain L33a     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3124395..3134535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNZ43_RS15635 - 3124735..3125118 (-) 384 WP_007613430.1 hotdog fold thioesterase -
  RNZ43_RS15640 comA 3125140..3125784 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  RNZ43_RS15645 comP 3125865..3128156 (-) 2292 WP_094247540.1 histidine kinase Regulator
  RNZ43_RS15650 comX 3128168..3128332 (-) 165 WP_007613432.1 competence pheromone ComX -
  RNZ43_RS15655 - 3128332..3129243 (-) 912 WP_416406408.1 polyprenyl synthetase family protein -
  RNZ43_RS15660 degQ 3129395..3129535 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  RNZ43_RS15665 - 3130000..3130341 (+) 342 WP_416405794.1 hypothetical protein -
  RNZ43_RS15670 - 3130348..3131568 (-) 1221 WP_003152038.1 EAL and HDOD domain-containing protein -
  RNZ43_RS15675 - 3131698..3133164 (-) 1467 WP_014305722.1 nicotinate phosphoribosyltransferase -
  RNZ43_RS15680 - 3133182..3133733 (-) 552 WP_025853916.1 cysteine hydrolase family protein -
  RNZ43_RS15685 - 3133830..3134228 (-) 399 WP_003152031.1 YueI family protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5518.30 Da        Isoelectric Point: 4.9432

>NTDB_id=885615 RNZ43_RS15660 WP_003152043.1 3129395..3129535(-) (degQ) [Bacillus velezensis strain L33a]
MENKLEEVKQLLFRLENDIRETTDSLRNINKSIDQLDKFSYAMKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=885615 RNZ43_RS15660 WP_003152043.1 3129395..3129535(-) (degQ) [Bacillus velezensis strain L33a]
GTGGAAAACAAATTAGAAGAAGTAAAGCAATTATTATTCCGACTTGAAAATGATATCAGAGAAACAACCGACTCATTACG
AAACATTAACAAAAGCATTGATCAGCTCGATAAATTCTCATATGCAATGAAAATTTCTTAA

Domains

Predicted by InterProScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

89.13

100

0.891