Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   RNZ43_RS15640 Genome accession   NZ_CP135143
Coordinates   3125140..3125784 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain L33a     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3120140..3130784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNZ43_RS15605 - 3121325..3121756 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  RNZ43_RS15610 - 3121756..3122097 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  RNZ43_RS15615 - 3122090..3123571 (+) 1482 WP_160249227.1 Na+/H+ antiporter subunit D -
  RNZ43_RS15620 - 3123577..3124053 (+) 477 WP_077722767.1 Na+/H+ antiporter subunit E -
  RNZ43_RS15625 - 3124053..3124337 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  RNZ43_RS15630 mnhG 3124321..3124695 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  RNZ43_RS15635 - 3124735..3125118 (-) 384 WP_007613430.1 hotdog fold thioesterase -
  RNZ43_RS15640 comA 3125140..3125784 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  RNZ43_RS15645 comP 3125865..3128156 (-) 2292 WP_094247540.1 histidine kinase Regulator
  RNZ43_RS15650 comX 3128168..3128332 (-) 165 WP_007613432.1 competence pheromone ComX -
  RNZ43_RS15655 - 3128332..3129243 (-) 912 WP_416406408.1 polyprenyl synthetase family protein -
  RNZ43_RS15660 degQ 3129395..3129535 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  RNZ43_RS15665 - 3130000..3130341 (+) 342 WP_416405794.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=885613 RNZ43_RS15640 WP_003152052.1 3125140..3125784(-) (comA) [Bacillus velezensis strain L33a]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=885613 RNZ43_RS15640 WP_003152052.1 3125140..3125784(-) (comA) [Bacillus velezensis strain L33a]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTTAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGCAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCATGTGCTGAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864