Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   RMQ61_RS09030 Genome accession   NZ_CP135090
Coordinates   1847334..1848023 (-) Length   229 a.a.
NCBI ID   WP_012027645.1    Uniprot ID   -
Organism   Streptococcus suis strain ID48908     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1842334..1853023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ61_RS09005 (RMQ61_09010) - 1842803..1843516 (-) 714 WP_313926287.1 NADPH-dependent oxidoreductase -
  RMQ61_RS09010 (RMQ61_09015) dnaI 1843513..1844412 (-) 900 WP_313926288.1 primosomal protein DnaI -
  RMQ61_RS09015 (RMQ61_09020) - 1844412..1845563 (-) 1152 WP_024412982.1 replication initiation/membrane attachment protein -
  RMQ61_RS09020 (RMQ61_09025) nrdR 1845550..1846041 (-) 492 WP_313926289.1 transcriptional regulator NrdR -
  RMQ61_RS09025 (RMQ61_09030) - 1846113..1847243 (-) 1131 WP_313926290.1 AI-2E family transporter -
  RMQ61_RS09030 (RMQ61_09035) covR 1847334..1848023 (-) 690 WP_012027645.1 DNA-binding response regulator Regulator
  RMQ61_RS09035 (RMQ61_09040) gndA 1848105..1849532 (-) 1428 WP_002942698.1 NADP-dependent phosphogluconate dehydrogenase -
  RMQ61_RS09040 (RMQ61_09045) - 1849629..1850168 (-) 540 WP_014736258.1 DUF177 domain-containing protein -
  RMQ61_RS09045 (RMQ61_09050) trxB 1850178..1851095 (-) 918 WP_002942687.1 thioredoxin-disulfide reductase -
  RMQ61_RS09050 (RMQ61_09055) - 1851109..1851333 (-) 225 WP_002936682.1 DUF4059 family protein -
  RMQ61_RS09055 (RMQ61_09060) - 1851351..1852694 (-) 1344 WP_313926291.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26255.14 Da        Isoelectric Point: 5.3968

>NTDB_id=884997 RMQ61_RS09030 WP_012027645.1 1847334..1848023(-) (covR) [Streptococcus suis strain ID48908]
MAKKILIAGKERNLSHFVSMELQKKDYLVDYASTGKEAMSLAHETDFDLILMSFQLSDMSSKELATELLAIKPATVMIVV
VEPTEVSQYGEEVLSYAVSYVVKPFVISDLVEQISAIFRGRDFIDNNCKQVHMHAAYRDLKVDFQNRTVTRGDELINLTR
REYDLLATLMNSPEPVSREQLLERVWKYEAASETNVVDVYIRYLRGKLDLPHQDSYIKTVRGVGYAMRD

Nucleotide


Download         Length: 690 bp        

>NTDB_id=884997 RMQ61_RS09030 WP_012027645.1 1847334..1848023(-) (covR) [Streptococcus suis strain ID48908]
ATGGCTAAGAAAATTTTGATTGCTGGTAAAGAACGCAATCTCTCGCATTTTGTTTCCATGGAATTGCAGAAAAAAGACTA
TCTTGTTGATTATGCATCGACAGGGAAAGAGGCTATGTCCTTGGCACATGAAACGGATTTTGACTTGATTCTGATGAGTT
TTCAGCTTTCAGACATGTCCAGTAAGGAATTGGCTACAGAACTGTTAGCGATAAAACCAGCCACGGTCATGATTGTGGTA
GTTGAGCCGACAGAAGTTAGTCAATATGGGGAAGAAGTCCTCTCTTATGCTGTTTCCTACGTAGTGAAGCCCTTTGTCAT
CAGTGATTTAGTGGAGCAAATCTCTGCGATTTTTCGTGGTCGTGATTTTATTGACAATAACTGTAAGCAGGTTCACATGC
ATGCGGCCTATCGTGATTTGAAGGTTGATTTCCAAAATCGAACAGTGACTCGAGGTGATGAATTGATTAATTTGACCCGC
CGAGAGTATGATCTGTTGGCGACCTTAATGAATAGCCCAGAGCCTGTTAGTCGAGAACAACTTCTTGAGCGTGTTTGGAA
ATATGAAGCGGCTTCTGAGACCAATGTCGTCGATGTATATATTCGCTATTTACGTGGTAAACTGGATTTGCCACATCAAG
ATTCATATATAAAAACGGTTCGTGGTGTCGGATATGCCATGCGCGATTGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

47.619

100

0.48
  covR Lactococcus lactis subsp. lactis strain DGCC12653

41.949

100

0.432