Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   RMQ61_RS06070 Genome accession   NZ_CP135090
Coordinates   1212806..1214032 (-) Length   408 a.a.
NCBI ID   WP_029188989.1    Uniprot ID   A0A9X4RTA5
Organism   Streptococcus suis strain ID48908     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1207806..1219032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ61_RS06045 (RMQ61_06050) - 1208144..1209328 (-) 1185 WP_313926152.1 excalibur calcium-binding domain-containing protein -
  RMQ61_RS06050 (RMQ61_06055) - 1209591..1209773 (+) 183 WP_002934978.1 4-oxalocrotonate tautomerase -
  RMQ61_RS06055 (RMQ61_06060) lepA 1209823..1211655 (-) 1833 WP_002943192.1 translation elongation factor 4 -
  RMQ61_RS06060 (RMQ61_06065) ndk 1211751..1212140 (-) 390 Protein_1152 nucleoside-diphosphate kinase -
  RMQ61_RS06065 (RMQ61_06070) yihA 1212163..1212750 (-) 588 WP_029188990.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  RMQ61_RS06070 (RMQ61_06075) clpX 1212806..1214032 (-) 1227 WP_029188989.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  RMQ61_RS06075 (RMQ61_06080) - 1214054..1214227 (-) 174 WP_002934972.1 hypothetical protein -
  RMQ61_RS06080 (RMQ61_06085) - 1214230..1214742 (-) 513 WP_313918898.1 dihydrofolate reductase -
  RMQ61_RS06085 (RMQ61_06090) - 1214918..1215757 (-) 840 WP_313918900.1 thymidylate synthase -
  RMQ61_RS06090 (RMQ61_06095) - 1215810..1216112 (-) 303 WP_105249422.1 hypothetical protein -
  RMQ61_RS06095 (RMQ61_06100) - 1216124..1216402 (-) 279 WP_012775087.1 hypothetical protein -
  RMQ61_RS06100 (RMQ61_06105) - 1216528..1217487 (-) 960 WP_023370402.1 ROK family glucokinase -
  RMQ61_RS06105 (RMQ61_06110) - 1217583..1217918 (-) 336 WP_002934966.1 hypothetical protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45325.83 Da        Isoelectric Point: 4.6382

>NTDB_id=884983 RMQ61_RS06070 WP_029188989.1 1212806..1214032(-) (clpX) [Streptococcus suis strain ID48908]
MAVKHTHEFIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEIIREELAEEVLTDLADTPKPQELLNILNNYVIGQDRA
KRALAVAVYNHYKRINFQDSRDESDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENIL
LKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIHVDTKN
ILFIVGGAFDGIEEIVKQRLGEKIIGFGHNNRAIDEKESYMQHIIADDIQKFGIIPELIGRLPVFAALDQLTTEDLVRIL
TEPKNALVKQYQTLLSYDDVELDFDEDALLAIAEKAIERKTGARGLRSIIEETMLDVMFEVPGQDNVKRVRVTKAAVDGK
EKPLLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=884983 RMQ61_RS06070 WP_029188989.1 1212806..1214032(-) (clpX) [Streptococcus suis strain ID48908]
ATGGCTGTTAAGCATACACATGAGTTTATTTATTGCTCATTTTGTGGAAAAAATCAAGAAGAAGTAAAAAAAATTATCGC
TGGAAACAATGTGTTTATCTGTAATGAATGTGTGGAATTAGCTCAGGAAATCATTCGTGAGGAACTGGCAGAAGAAGTAT
TGACTGACCTGGCTGACACGCCAAAGCCACAAGAATTGCTCAATATTTTAAACAATTATGTCATTGGGCAAGACCGTGCA
AAGCGTGCCTTGGCAGTAGCTGTTTACAACCACTACAAGCGTATCAATTTCCAGGATAGCCGTGATGAGAGTGATGTTGA
TTTGCAAAAATCAAATATCCTCATGATTGGCCCGACTGGTTCAGGTAAGACTTTCTTGGCTCAAACCTTGGCTAAAAGTT
TGAATGTCCCGTTTGCTATTGCTGATGCGACCGCTCTTACTGAGGCGGGTTATGTTGGTGAAGACGTAGAAAATATCCTC
CTCAAACTTTTGCAGGCTGCAGACTTTAACATCGACCGTGCAGAAAGAGGAATTATCTATGTGGATGAAATTGATAAGAT
TGCCAAAAAAGGTGAAAATGTGTCCATTACCCGCGATGTATCTGGTGAAGGTGTCCAGCAAGCTCTCCTAAAAATTATCG
AGGGAACTGTGGCCAGCGTACCACCACAAGGCGGACGCAAACATCCAAACCAAGAAATGATTCACGTGGACACCAAAAAT
ATCCTGTTTATCGTTGGCGGTGCATTTGATGGTATCGAAGAAATCGTCAAACAGCGTCTCGGTGAAAAAATCATCGGTTT
TGGTCATAATAATCGTGCTATTGATGAAAAAGAATCATACATGCAACATATCATTGCAGACGATATTCAAAAATTCGGTA
TCATTCCAGAGTTGATTGGTCGCTTGCCTGTATTCGCAGCTTTGGACCAATTGACAACAGAGGATTTGGTACGCATTTTG
ACGGAACCGAAGAATGCTCTTGTAAAACAATACCAGACACTCTTGTCTTATGATGACGTGGAGCTTGACTTTGATGAGGA
CGCCTTGTTAGCAATTGCAGAAAAAGCAATTGAACGTAAGACTGGTGCTCGTGGACTTCGTTCCATCATTGAAGAAACGA
TGTTGGATGTCATGTTTGAGGTGCCAGGTCAAGATAACGTTAAACGTGTTCGTGTAACAAAAGCAGCAGTAGACGGTAAG
GAAAAGCCTTTACTAGAAACTGCATAA

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

83.13

100

0.833
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.209

98.529

0.574