Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   RMP65_RS04985 Genome accession   NZ_CP135089
Coordinates   1004452..1005678 (-) Length   408 a.a.
NCBI ID   WP_313680923.1    Uniprot ID   -
Organism   Streptococcus suis strain ID34567     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 999452..1010678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP65_RS04960 (RMP65_04960) - 999626..1000939 (-) 1314 WP_167787238.1 excalibur calcium-binding domain-containing protein -
  RMP65_RS04965 (RMP65_04965) - 1001074..1001256 (+) 183 WP_044762151.1 4-oxalocrotonate tautomerase -
  RMP65_RS04970 (RMP65_04970) lepA 1001305..1003137 (-) 1833 WP_024385201.1 translation elongation factor 4 -
  RMP65_RS04975 (RMP65_04975) ndk 1003375..1003788 (-) 414 WP_002934976.1 nucleoside-diphosphate kinase -
  RMP65_RS04980 (RMP65_04980) yihA 1003811..1004398 (-) 588 WP_014637952.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  RMP65_RS04985 (RMP65_04985) clpX 1004452..1005678 (-) 1227 WP_313680923.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  RMP65_RS04990 (RMP65_04990) - 1005700..1005873 (-) 174 WP_024411302.1 hypothetical protein -
  RMP65_RS04995 (RMP65_04995) - 1005876..1006388 (-) 513 WP_105095071.1 dihydrofolate reductase -
  RMP65_RS05000 (RMP65_05000) - 1006563..1007402 (-) 840 WP_105095072.1 thymidylate synthase -
  RMP65_RS05005 (RMP65_05005) - 1007454..1007750 (-) 297 WP_238597357.1 hypothetical protein -
  RMP65_RS05010 (RMP65_05010) - 1007768..1008046 (-) 279 WP_024381822.1 hypothetical protein -
  RMP65_RS05015 (RMP65_05015) - 1008172..1009131 (-) 960 WP_105095074.1 ROK family glucokinase -
  RMP65_RS05020 (RMP65_05020) - 1009223..1009558 (-) 336 WP_253222043.1 hypothetical protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45249.73 Da        Isoelectric Point: 4.5982

>NTDB_id=884931 RMP65_RS04985 WP_313680923.1 1004452..1005678(-) (clpX) [Streptococcus suis strain ID34567]
MAVKHTHELIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEIISEELAEEVLTDLADTPKPQELLNILNNYVIGQDRA
KRALAVAVYNHYKRINFQDSRDENDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENIL
LKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIHVDTKN
ILFIVGGAFDGIEEIVKQRLGEKIIGFGHNNRAIDEKESYMQHIIADDIQKFGIIPELIGRLPVFAALDQLTTEDLVRIL
TEPKNALVKQYQTLLSYDDVELDFDEDALLAIAEKAIERKTGARGLRSIIEETMLDVMFEVPGQDNVKRVRVTKAAVDGK
EKPLLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=884931 RMP65_RS04985 WP_313680923.1 1004452..1005678(-) (clpX) [Streptococcus suis strain ID34567]
ATGGCTGTTAAGCATACACATGAGCTAATCTATTGCTCATTTTGCGGAAAAAATCAAGAAGAAGTTAAAAAAATTATTGC
AGGAAACAATGTTTTCATTTGTAATGAATGTGTAGAATTGGCCCAAGAAATCATTAGTGAGGAACTGGCAGAAGAAGTTT
TGACAGACTTGGCCGATACGCCAAAGCCACAAGAATTACTCAATATCCTGAACAACTACGTCATCGGACAGGATCGTGCA
AAACGTGCTTTAGCAGTAGCCGTTTACAACCACTACAAACGTATCAATTTCCAGGATAGCCGTGATGAGAACGATGTTGA
TTTGCAAAAATCAAATATCCTTATGATTGGCCCGACTGGTTCAGGAAAAACCTTCCTAGCACAGACCTTGGCTAAAAGTT
TGAATGTCCCGTTTGCTATTGCTGATGCGACCGCTCTTACTGAGGCGGGTTATGTTGGTGAAGACGTAGAAAATATCCTC
CTCAAACTTTTGCAAGCTGCAGACTTTAACATCGACCGTGCAGAAAGAGGAATTATCTATGTGGATGAAATTGATAAAAT
TGCCAAAAAAGGTGAAAATGTGTCCATTACCCGCGATGTATCTGGTGAAGGTGTCCAGCAAGCTCTCCTAAAAATTATCG
AGGGAACTGTGGCCAGCGTACCACCACAAGGCGGACGCAAACATCCAAACCAAGAAATGATTCACGTGGACACCAAAAAT
ATCCTGTTTATCGTTGGCGGTGCATTTGATGGTATCGAAGAAATCGTCAAACAGCGTCTCGGTGAAAAAATCATCGGTTT
TGGTCATAATAATCGTGCTATTGATGAAAAAGAATCATACATGCAACATATCATTGCAGACGATATTCAAAAATTCGGTA
TCATTCCAGAGTTGATTGGTCGCTTGCCTGTATTTGCAGCTTTGGACCAATTGACAACAGAGGATTTGGTACGTATTTTG
ACGGAACCAAAGAATGCTCTTGTAAAACAATACCAGACACTCTTGTCTTATGATGACGTGGAGCTTGACTTTGATGAGGA
CGCCTTGTTAGCAATTGCAGAAAAAGCAATTGAACGTAAGACTGGCGCTCGTGGACTTCGTTCCATCATTGAAGAAACGA
TGTTGGATGTCATGTTTGAGGTGCCAGGCCAAGATAACGTTAAACGTGTTCGTGTAACAAAAGCAGCAGTAGACGGTAAG
GAAAAGCCTTTACTAGAAACTGCTTAA

Domains

Predicted by InterproScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

82.885

100

0.831
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.209

98.529

0.574