Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | RMP65_RS00800 | Genome accession | NZ_CP135089 |
| Coordinates | 123172..124125 (+) | Length | 317 a.a. |
| NCBI ID | WP_024414316.1 | Uniprot ID | A0A4T2H6N2 |
| Organism | Streptococcus suis strain ID34567 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 118172..129125
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RMP65_RS00760 (RMP65_00760) | - | 118439..119389 (-) | 951 | WP_074391326.1 | S66 peptidase family protein | - |
| RMP65_RS00765 (RMP65_00765) | comYA | 119475..120425 (+) | 951 | WP_074391327.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| RMP65_RS00770 (RMP65_00770) | comYB | 120337..121374 (+) | 1038 | WP_269472402.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| RMP65_RS00775 (RMP65_00775) | comYC | 121376..121657 (+) | 282 | WP_074391328.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| RMP65_RS00780 (RMP65_00780) | comGD | 121638..122045 (+) | 408 | WP_074391329.1 | competence type IV pilus minor pilin ComGD | - |
| RMP65_RS00785 (RMP65_00785) | comYE | 122017..122310 (+) | 294 | WP_024401507.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| RMP65_RS00790 (RMP65_00790) | comGF/cglF | 122297..122731 (+) | 435 | WP_044762030.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| RMP65_RS00795 (RMP65_00795) | comGG | 122709..123122 (+) | 414 | WP_074391330.1 | competence type IV pilus minor pilin ComGG | - |
| RMP65_RS00800 (RMP65_00800) | comYH | 123172..124125 (+) | 954 | WP_024414316.1 | class I SAM-dependent methyltransferase | Machinery gene |
| RMP65_RS00805 (RMP65_00805) | - | 124175..125362 (+) | 1188 | WP_044680792.1 | acetate kinase | - |
| RMP65_RS00810 (RMP65_00810) | - | 125679..126230 (+) | 552 | WP_044680793.1 | folate family ECF transporter S component | - |
| RMP65_RS00815 (RMP65_00815) | - | 126286..127542 (+) | 1257 | WP_074391333.1 | folylpolyglutamate synthase/dihydrofolate synthase family protein | - |
| RMP65_RS00820 (RMP65_00820) | pepA | 127587..128648 (-) | 1062 | WP_024399998.1 | glutamyl aminopeptidase | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35601.70 Da Isoelectric Point: 4.4571
>NTDB_id=884915 RMP65_RS00800 WP_024414316.1 123172..124125(+) (comYH) [Streptococcus suis strain ID34567]
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVAGQHETDLVVNNNKTLKQLDLTKEEWRRAFQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVSTSKVTVLEIGSGTGNLAQTILNASQKELDYLGIEVDDLLIDLSASIADVMQAD
ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPNEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQEQANIVAMIALPPNLFGKAAMAKSIFVLQKKAARPLAPFVYPLQSLQEPEAIQKFMLNFKNWKQENAI
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVAGQHETDLVVNNNKTLKQLDLTKEEWRRAFQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVSTSKVTVLEIGSGTGNLAQTILNASQKELDYLGIEVDDLLIDLSASIADVMQAD
ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPNEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQEQANIVAMIALPPNLFGKAAMAKSIFVLQKKAARPLAPFVYPLQSLQEPEAIQKFMLNFKNWKQENAI
Nucleotide
Download Length: 954 bp
>NTDB_id=884915 RMP65_RS00800 WP_024414316.1 123172..124125(+) (comYH) [Streptococcus suis strain ID34567]
ATGAATTTTGAAAAGATCGAACAGGCTTACGACCTGCTATTAGAAAACGTACAGACTATCCAAAACCAGCTAGGCACCAA
TATCTACGATGCCATGATTGAGCAAAATGCTGCTTACGTAGCTGGTCAGCATGAGACAGATCTTGTTGTCAATAATAACA
AGACCTTGAAACAACTAGATTTAACCAAGGAAGAATGGCGTCGTGCCTTCCAATTCCTGCTCATCAAGGCCAATCAGACT
GAACCCATGCAGTATAATCACCAGTTCACACCAGACTCTATCGGATTTATCCTATCTTTTCTAGTGGACCAACTAGTATC
TACTTCCAAGGTGACGGTTCTGGAAATTGGTTCGGGGACAGGCAATCTAGCTCAGACCATTCTCAACGCCAGCCAGAAAG
AATTAGATTACTTGGGGATTGAAGTGGACGACCTCTTGATTGATTTGTCGGCAAGTATTGCGGATGTCATGCAGGCAGAT
ATTTCTTTTGCTCAGGGAGATGCGGTACGTCCGCAGATTTTGAAGGAAAGTCAAGTGATTTTGGGAGATTTGCCTATTGG
CTACTATCCAGATGACCAGATTGCCAGCCGTTATCAGGTTGCCAGCCCAAATGAACATACCTACGCCCATCATTTACTCA
TGGAACAGTCCCTCAAATATCTGGAAAAGGATGGATTCGCTATTCTCTTGGCTCCAAATGATTTGTTGACTAGTCCGCAA
AGCGATTTACTGAAAGGCTGGTTACAGGAGCAAGCCAATATCGTTGCCATGATTGCCCTGCCACCAAATCTCTTTGGGAA
GGCTGCTATGGCCAAGTCTATTTTTGTCTTGCAAAAGAAAGCTGCAAGACCGTTGGCGCCGTTTGTTTATCCCTTACAAA
GTCTTCAAGAACCAGAAGCTATTCAGAAGTTCATGCTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAA
ATGAATTTTGAAAAGATCGAACAGGCTTACGACCTGCTATTAGAAAACGTACAGACTATCCAAAACCAGCTAGGCACCAA
TATCTACGATGCCATGATTGAGCAAAATGCTGCTTACGTAGCTGGTCAGCATGAGACAGATCTTGTTGTCAATAATAACA
AGACCTTGAAACAACTAGATTTAACCAAGGAAGAATGGCGTCGTGCCTTCCAATTCCTGCTCATCAAGGCCAATCAGACT
GAACCCATGCAGTATAATCACCAGTTCACACCAGACTCTATCGGATTTATCCTATCTTTTCTAGTGGACCAACTAGTATC
TACTTCCAAGGTGACGGTTCTGGAAATTGGTTCGGGGACAGGCAATCTAGCTCAGACCATTCTCAACGCCAGCCAGAAAG
AATTAGATTACTTGGGGATTGAAGTGGACGACCTCTTGATTGATTTGTCGGCAAGTATTGCGGATGTCATGCAGGCAGAT
ATTTCTTTTGCTCAGGGAGATGCGGTACGTCCGCAGATTTTGAAGGAAAGTCAAGTGATTTTGGGAGATTTGCCTATTGG
CTACTATCCAGATGACCAGATTGCCAGCCGTTATCAGGTTGCCAGCCCAAATGAACATACCTACGCCCATCATTTACTCA
TGGAACAGTCCCTCAAATATCTGGAAAAGGATGGATTCGCTATTCTCTTGGCTCCAAATGATTTGTTGACTAGTCCGCAA
AGCGATTTACTGAAAGGCTGGTTACAGGAGCAAGCCAATATCGTTGCCATGATTGCCCTGCCACCAAATCTCTTTGGGAA
GGCTGCTATGGCCAAGTCTATTTTTGTCTTGCAAAAGAAAGCTGCAAGACCGTTGGCGCCGTTTGTTTATCCCTTACAAA
GTCTTCAAGAACCAGAAGCTATTCAGAAGTTCATGCTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
61.076 |
99.685 |
0.609 |
| comYH | Streptococcus mutans UA159 |
60.759 |
99.685 |
0.606 |