Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   RMQ62_RS09055 Genome accession   NZ_CP135065
Coordinates   1873956..1874759 (+) Length   267 a.a.
NCBI ID   WP_024399908.1    Uniprot ID   -
Organism   Streptococcus suis strain ID24665     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1868956..1879759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ62_RS09030 (RMQ62_09030) - 1869385..1870083 (-) 699 WP_013730248.1 amino acid ABC transporter permease -
  RMQ62_RS09035 (RMQ62_09035) - 1870098..1870937 (-) 840 WP_313681060.1 transporter substrate-binding domain-containing protein -
  RMQ62_RS09040 (RMQ62_09040) - 1870948..1871709 (-) 762 WP_024407012.1 amino acid ABC transporter ATP-binding protein -
  RMQ62_RS09045 (RMQ62_09045) micA 1871903..1872607 (+) 705 WP_004298854.1 response regulator YycF Regulator
  RMQ62_RS09050 (RMQ62_09050) micB 1872600..1873949 (+) 1350 WP_002935841.1 cell wall metabolism sensor histidine kinase VicK Regulator
  RMQ62_RS09055 (RMQ62_09055) vicX 1873956..1874759 (+) 804 WP_024399908.1 MBL fold metallo-hydrolase Regulator
  RMQ62_RS09060 (RMQ62_09060) vga(F) 1875017..1876402 (+) 1386 WP_014637680.1 ABC-F type ribosomal protection protein Vga(F) -
  RMQ62_RS09065 (RMQ62_09065) pbp2b 1876494..1878563 (+) 2070 WP_125183704.1 penicillin-binding protein PBP2B -
  RMQ62_RS09070 (RMQ62_09070) recR 1878572..1879168 (+) 597 WP_024408566.1 recombination mediator RecR -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29689.78 Da        Isoelectric Point: 5.7755

>NTDB_id=884750 RMQ62_RS09055 WP_024399908.1 1873956..1874759(+) (vicX) [Streptococcus suis strain ID24665]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
TQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=884750 RMQ62_RS09055 WP_024399908.1 1873956..1874759(+) (vicX) [Streptococcus suis strain ID24665]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACTTGGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTGGCGGAAATTGACCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGGATGGAT
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGATATTGAGTCATTTGGTGTCAGTCATGATGCGGCCTGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCGAACCATGATATTGAAATTTTGCGCTCAGGTTCATATTCATGGAATTTGAA
GCAACGGATTTTGTCAGATAAGGGCCACCTTTGTAACGAAGACGGTGCTGACGCCATGATTCGCTCGTTGGGAAATCGGA
CAAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAATTG
ACTCAGGCTGATTTAGGAGTTGGAGTGGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.154

100

0.772