Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   RJT70_RS15840 Genome accession   NZ_CP135059
Coordinates   3503977..3505428 (+) Length   483 a.a.
NCBI ID   WP_178385942.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzicola strain HERB_Xoc_1931     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3498977..3510428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJT70_RS15815 - 3498985..3499356 (-) 372 WP_353849113.1 DUF559 domain-containing protein -
  RJT70_RS15820 - 3499428..3499631 (-) 204 Protein_2997 hypothetical protein -
  RJT70_RS15825 sucD 3499790..3500665 (-) 876 WP_014504314.1 succinate--CoA ligase subunit alpha -
  RJT70_RS15830 sucC 3500690..3501859 (-) 1170 WP_014504315.1 ADP-forming succinate--CoA ligase subunit beta -
  RJT70_RS15835 - 3502093..3503706 (+) 1614 WP_014504316.1 HAMP domain-containing sensor histidine kinase -
  RJT70_RS15840 pilR 3503977..3505428 (+) 1452 WP_178385942.1 sigma-54 dependent transcriptional regulator Regulator
  RJT70_RS15845 - 3505501..3505707 (+) 207 WP_082348324.1 YhfG family protein -
  RJT70_RS15850 - 3505769..3506278 (+) 510 WP_179208360.1 Fic family protein -
  RJT70_RS15855 pilB 3506287..3508020 (-) 1734 WP_353849114.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RJT70_RS15860 - 3508055..3509581 (-) 1527 WP_044749930.1 membrane protein -
  RJT70_RS15865 - 3509551..3510180 (-) 630 WP_353849115.1 hypothetical protein -

Sequence

Protein


Download         Length: 483 a.a.        Molecular weight: 52497.23 Da        Isoelectric Point: 6.8291

>NTDB_id=884593 RJT70_RS15840 WP_178385942.1 3503977..3505428(+) (pilR) [Xanthomonas oryzae pv. oryzicola strain HERB_Xoc_1931]
MRRAPLDNCRPSSRWAIVRSMSEPKSALVVDDERDIRELLVLTLSRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIARQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNHDRPAPPPPPEQASRL
LGDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGA
HADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHRDLGELVSDGRFRHDLYYR
INVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISATD
LRLPAHGGHRLAATPGNAAVEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKL
GME

Nucleotide


Download         Length: 1452 bp        

>NTDB_id=884593 RJT70_RS15840 WP_178385942.1 3503977..3505428(+) (pilR) [Xanthomonas oryzae pv. oryzicola strain HERB_Xoc_1931]
TTGCGCCGCGCCCCGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGCAGCATGAGCGAACCCAAAAGTGC
CCTGGTTGTCGATGACGAGCGTGATATTCGCGAGTTGCTTGTTCTCACCTTGAGCCGTATGGGGCTGCGCATCAGCACCG
CTGCCAATCTGGCCGAAGCGCGCGAATTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGCCTGCCCGAC
GGCAATGGCATCGAGCTGGTCACCGAAATCGCCAGGCAGTACCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAACCGGTGGACATCGGCGTGCTGCGCG
GCTTGGTCAAGCACGCGCTGGAATTGAACAACCACGACCGCCCTGCTCCGCCGCCGCCACCTGAACAGGCCAGCCGCCTG
CTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGCAGTCAGGCACCGGTCTACATCGT
CGGCGAATCCGGGGTGGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCGTGC
CGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGCGCG
CATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTGCCGTTGCA
GATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGTCCGGTCGGCGCCTCCGGCGAAACCCTGGTGGACG
TACGCATCCTGTCGGCCACCCACAGGGACCTGGGCGAGCTGGTCTCCGACGGCCGTTTTCGACACGATCTGTACTACCGC
ATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACTTGCCGCAGCTGGCCGCTGCCATCATCGC
GCGCCTGGCGCACAGCCACGGCCGCCCCATTCCACTGCTGACCCAATCCGCGCTCGACGCACTGGATCACTACGGCTTCC
CCGGCAACGTGCGCGAACTGGAAAACATCCTTGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCCACCGAC
CTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCACACCCGGCAACGCCGCCGTGGAACCACGCGAAGCCGTCGT
CGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAACAACTGGAACGCGCCGCGATCCAGAAAGCGCTGGAAG
AAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGTTGGGTATCACGTTTCGAGCGCTGCGTTACAAGCTCAAGAAGTTG
GGGATGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(440-480)

Sigma-54 interaction domain (Sigma54_activat)

(161-326)

Response regulator receiver domain (Response_reg)

(28-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.203

95.652

0.605
  pilR Acinetobacter baumannii strain A118

48.701

95.652

0.466