Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   ViNHUV68_RS18330 Genome accession   NZ_CP134976
Coordinates   884350..885531 (-) Length   393 a.a.
NCBI ID   WP_391090534.1    Uniprot ID   -
Organism   Vibrio sp. NH-UV-68     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 879350..890531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ViNHUV68_RS18325 (ViNHUV68_37030) cqsS 882266..884323 (+) 2058 WP_391090532.1 response regulator Regulator
  ViNHUV68_RS18330 (ViNHUV68_37040) cqsA 884350..885531 (-) 1182 WP_391090534.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  ViNHUV68_RS18335 (ViNHUV68_37050) - 885738..886703 (-) 966 WP_038176441.1 TDT family transporter -
  ViNHUV68_RS18340 (ViNHUV68_37060) clcA 886830..888230 (-) 1401 WP_038176443.1 H(+)/Cl(-) exchange transporter ClcA -
  ViNHUV68_RS18345 (ViNHUV68_37070) - 888646..889617 (-) 972 WP_391090536.1 GTP-binding protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 44135.21 Da        Isoelectric Point: 6.9907

>NTDB_id=884403 ViNHUV68_RS18330 WP_391090534.1 884350..885531(-) (cqsA) [Vibrio sp. NH-UV-68]
MNKLNNYSTLPRFVNDKLNYYLNDLIYSNNNKNHLVLGAVPTEKDLVIQSNDYLDLSNNPEIIEHHISAIRKRKNSPFMS
GIFLQNETAKPQVEIQLANYTGFQSCLLSQSGWAANLALLQTICDSSTQIYVDFFAHMSLWEGARIAGADIHPFMHNNVK
HLSKLIKRHGPGIVLVDSIYSTIGTIAPLADLIAVAKENGCAILVDESHSLGTHGEQGRGLLHQQNLTHLVDFMTASLAK
TFAYRAGAIWCNNQADKCIPFVGYPAIFSSAMLPYELDRLDKTLEVIQRSDDKRQRLEEISHSIKTELIDIGISVRSHSQ
IIALETGDERNTEKVRDYLESNGIFGAVFCRPATPRNKNIIRFSLNSSITDDQADKLINVCRQAYKNQNLYIL

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=884403 ViNHUV68_RS18330 WP_391090534.1 884350..885531(-) (cqsA) [Vibrio sp. NH-UV-68]
ATGAATAAACTAAATAATTATTCGACCCTACCTCGATTCGTTAATGATAAATTAAATTATTATCTTAATGACTTAATTTA
CTCAAATAATAATAAAAATCACCTCGTTTTAGGTGCGGTACCGACCGAAAAAGATCTGGTCATTCAAAGTAATGACTATT
TAGACTTATCGAATAATCCAGAAATTATAGAACACCACATAAGCGCTATTCGCAAACGGAAAAATAGCCCGTTTATGTCT
GGGATCTTTTTACAAAATGAAACAGCTAAACCACAAGTCGAGATACAATTAGCCAACTACACAGGATTCCAGTCTTGCTT
GTTATCCCAATCAGGTTGGGCTGCGAATCTGGCATTACTACAAACGATTTGTGACAGTTCTACTCAGATCTATGTCGATT
TTTTTGCCCATATGTCACTGTGGGAAGGGGCTCGAATCGCAGGTGCTGATATCCACCCTTTTATGCACAATAATGTAAAG
CATTTAAGTAAACTGATTAAACGCCATGGCCCTGGAATCGTCTTGGTAGATTCGATTTACAGCACGATAGGTACCATCGC
TCCCCTGGCCGATCTTATCGCCGTGGCGAAAGAGAACGGTTGTGCAATTTTGGTTGATGAGTCTCATTCACTTGGCACTC
ACGGGGAACAAGGACGCGGATTACTTCATCAGCAGAACCTGACCCACTTAGTTGATTTTATGACCGCAAGTTTAGCCAAG
ACGTTTGCCTATCGCGCTGGCGCAATTTGGTGTAACAATCAAGCCGATAAATGCATCCCCTTTGTCGGCTATCCCGCTAT
ATTTAGCTCAGCGATGCTACCGTATGAACTCGACAGACTAGACAAAACGCTCGAAGTGATACAACGCAGTGATGACAAAC
GTCAGCGCTTAGAAGAAATCAGCCACTCTATTAAAACGGAATTAATTGATATTGGCATTAGCGTACGCAGTCATTCACAA
ATAATTGCATTAGAAACAGGAGATGAAAGAAACACTGAGAAAGTGAGAGATTACTTAGAGTCAAATGGTATATTTGGAGC
GGTGTTTTGTCGCCCGGCAACACCGCGCAATAAAAATATTATTCGCTTTTCACTCAATAGTTCGATCACGGATGACCAAG
CTGATAAGTTAATTAACGTTTGCCGCCAGGCTTATAAAAATCAAAACTTATATATTTTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(48-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.915

98.473

0.58