Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   ViNHUV68_RS18325 Genome accession   NZ_CP134976
Coordinates   882266..884323 (+) Length   685 a.a.
NCBI ID   WP_391090532.1    Uniprot ID   -
Organism   Vibrio sp. NH-UV-68     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 877266..889323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ViNHUV68_RS18315 (ViNHUV68_37010) - 877970..879100 (+) 1131 WP_038176436.1 exonuclease SbcCD subunit D -
  ViNHUV68_RS18320 (ViNHUV68_37020) - 879110..882151 (+) 3042 WP_391090530.1 AAA family ATPase -
  ViNHUV68_RS18325 (ViNHUV68_37030) cqsS 882266..884323 (+) 2058 WP_391090532.1 response regulator Regulator
  ViNHUV68_RS18330 (ViNHUV68_37040) cqsA 884350..885531 (-) 1182 WP_391090534.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  ViNHUV68_RS18335 (ViNHUV68_37050) - 885738..886703 (-) 966 WP_038176441.1 TDT family transporter -
  ViNHUV68_RS18340 (ViNHUV68_37060) clcA 886830..888230 (-) 1401 WP_038176443.1 H(+)/Cl(-) exchange transporter ClcA -

Sequence

Protein


Download         Length: 685 a.a.        Molecular weight: 78320.10 Da        Isoelectric Point: 5.1493

>NTDB_id=884402 ViNHUV68_RS18325 WP_391090532.1 882266..884323(+) (cqsS) [Vibrio sp. NH-UV-68]
MDAILDSIRKVYQYAEPNLTLVGWMGLIGFPTYYYIWSELFPQPYENLTLRIACSVLFAGIALRLYLPKYLQRYLAEYYF
VSIGICLPFFFSFMMFMNEWSTIWAMSFMASIFLHVLLIHQTRLMLSQAVVAIAAAYFIVYGFDLEAVQQQMVLPYIPIF
LFTYVFGNLFYFRNQAGHEVKVSLAKSFGAGIAHEMRNPLSALKSSLDVLDSLLPPLNNSHAASYKLTEQEVAIAREILT
DADEVIRTGNETIDLLLTSIDENRVSRNTFKKHSIRHVVEGSLRSFAYKSGKDKQAVNLLPGDDFDFFGSDALIKYALYN
LLKNAFYYQNDSGFKISVELRCFERHNELVFTDNGVGIEPDVLDNVFEDFYTFGKTGSYGLGLPFCRKVMVALGGQICCR
SELGQWTEFTLRFPLYKSKEVVNIKADIMKSKSVLYIGGQSKPFRLINEEAFYRGFRLRQLSLEAARNKQEYEFEFDLII
INLDEAIENPDALHELESKLHFTEGRIVFLFNQQNRYHNDIERHLTVYPVEVHTFLLKTGAILDELLFETPSTNRNLLPR
KRVVTGKTILLADDNHSLRTYTAILLEQQGFDVLQAEDGQQALSVIADRQVDLIIMDLEMPLIDGLQATESIRQSQATYS
SIPILAYTGDSSPETIEKIQQVGMNDFIVKPADTSLLLDKIANWI

Nucleotide


Download         Length: 2058 bp        

>NTDB_id=884402 ViNHUV68_RS18325 WP_391090532.1 882266..884323(+) (cqsS) [Vibrio sp. NH-UV-68]
ATGGACGCAATTCTAGACTCGATTCGTAAGGTCTATCAATATGCTGAGCCCAACCTCACTTTGGTTGGGTGGATGGGGCT
GATTGGTTTTCCTACTTATTATTATATTTGGAGTGAACTTTTTCCTCAGCCGTATGAGAACCTTACCCTGCGTATAGCAT
GCTCAGTGCTGTTTGCTGGTATTGCTCTGCGACTCTATCTACCTAAATATTTGCAACGGTATTTAGCTGAATATTACTTT
GTCTCTATCGGTATTTGCCTACCATTTTTCTTTAGCTTCATGATGTTTATGAATGAATGGTCAACGATTTGGGCAATGTC
TTTTATGGCCTCGATCTTCTTACATGTCCTACTGATCCACCAAACACGTTTGATGCTTTCTCAGGCAGTCGTTGCTATAG
CCGCTGCCTACTTCATCGTTTATGGTTTTGATCTAGAAGCCGTTCAGCAACAAATGGTTTTGCCCTACATTCCGATTTTT
CTGTTTACCTATGTTTTTGGTAATTTATTTTACTTTCGTAATCAAGCGGGTCATGAGGTTAAAGTGTCGCTCGCTAAATC
ATTTGGTGCGGGTATCGCTCATGAAATGCGCAACCCTCTCAGCGCACTTAAATCTTCTTTAGACGTACTTGACTCATTGC
TGCCACCACTGAATAACAGTCATGCTGCGAGTTACAAGTTAACCGAGCAGGAGGTAGCCATTGCGCGAGAAATTCTGACT
GATGCCGATGAAGTGATTCGTACTGGTAATGAAACCATTGATTTGCTTCTTACTTCAATTGATGAAAATCGAGTCTCAAG
AAATACGTTTAAGAAGCACTCTATTCGTCATGTTGTGGAAGGATCATTGCGAAGTTTTGCGTATAAGAGTGGCAAAGACA
AACAGGCCGTTAACTTATTGCCCGGAGATGACTTTGATTTTTTTGGCAGTGATGCGCTAATAAAATATGCGTTGTACAAC
CTACTCAAAAATGCCTTTTACTACCAAAACGATAGCGGGTTTAAAATATCAGTCGAACTGAGGTGTTTTGAACGGCACAA
TGAATTGGTGTTTACTGATAATGGTGTTGGCATTGAGCCTGATGTGCTAGACAATGTATTTGAAGATTTCTATACCTTTG
GTAAAACAGGCAGTTATGGTTTGGGCTTGCCTTTTTGTCGTAAAGTCATGGTTGCCTTAGGGGGGCAGATATGCTGTCGC
TCTGAGCTCGGTCAATGGACGGAGTTTACACTGCGTTTTCCTCTGTACAAATCAAAAGAAGTGGTCAACATTAAAGCCGA
TATCATGAAATCAAAATCTGTACTTTATATTGGCGGCCAGAGCAAACCATTTCGCCTGATCAACGAAGAGGCTTTTTATC
GCGGTTTTCGCCTGCGTCAGTTATCACTGGAAGCAGCGCGCAATAAACAAGAGTATGAATTTGAATTTGACCTCATCATT
ATCAATCTAGACGAAGCGATAGAGAACCCAGACGCCTTACACGAGCTTGAGAGTAAACTGCATTTCACTGAAGGGCGGAT
CGTATTTCTGTTTAATCAACAAAATCGCTATCACAATGATATTGAACGCCATTTAACCGTGTATCCAGTTGAGGTCCATA
CCTTTTTACTAAAAACGGGGGCAATATTAGATGAATTGCTGTTTGAAACTCCGAGCACGAATCGAAATCTTTTACCGCGT
AAGCGTGTAGTGACAGGGAAAACCATCTTATTGGCTGACGATAACCACTCACTGAGAACTTACACCGCTATTTTACTCGA
GCAACAAGGCTTTGACGTGTTGCAAGCGGAGGATGGACAGCAAGCGCTTAGCGTAATAGCAGATCGCCAAGTGGACTTAA
TCATCATGGATCTCGAGATGCCTTTAATCGATGGCTTGCAAGCGACTGAGTCAATCCGGCAGTCACAAGCAACGTATTCA
AGTATACCCATATTGGCTTATACCGGCGATTCGAGCCCAGAAACGATAGAAAAAATCCAACAAGTCGGTATGAATGACTT
TATTGTTAAACCTGCAGATACCAGTTTATTACTTGATAAAATTGCTAACTGGATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(569-681)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(314-416)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

52.855

99.708

0.527