Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   ViNHUV68_RS02125 Genome accession   NZ_CP134975
Coordinates   426799..427419 (-) Length   206 a.a.
NCBI ID   WP_038173845.1    Uniprot ID   -
Organism   Vibrio sp. NH-UV-68     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 421799..432419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ViNHUV68_RS02115 (ViNHUV68_04270) aceF 423063..424988 (+) 1926 WP_391089091.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  ViNHUV68_RS02120 (ViNHUV68_04280) lpdA 425256..426683 (+) 1428 WP_038173844.1 dihydrolipoyl dehydrogenase -
  ViNHUV68_RS02125 (ViNHUV68_04290) opaR 426799..427419 (-) 621 WP_038173845.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  ViNHUV68_RS02130 (ViNHUV68_04300) hpt 427738..428268 (+) 531 WP_038173846.1 hypoxanthine phosphoribosyltransferase -
  ViNHUV68_RS02135 (ViNHUV68_04310) can 428347..429015 (-) 669 WP_038173847.1 carbonate dehydratase -
  ViNHUV68_RS02140 (ViNHUV68_04320) - 429416..431092 (+) 1677 WP_391090242.1 SulP family inorganic anion transporter -
  ViNHUV68_RS02145 (ViNHUV68_04330) - 431255..432172 (+) 918 WP_038173849.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23841.27 Da        Isoelectric Point: 6.6034

>NTDB_id=884378 ViNHUV68_RS02125 WP_038173845.1 426799..427419(-) (opaR) [Vibrio sp. NH-UV-68]
MDSIAKRPRTRLSPQKRKQQLMEISVEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNYVVRQFSNFLS
DNIDLDLHAKENLSNLTSAMIELVINDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFVKAIERGEVCDQHSPA
ELATLFHGIFYSLFIQATRTHDEEMMKKLTTNYLDMLCIYKHAKNG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=884378 ViNHUV68_RS02125 WP_038173845.1 426799..427419(-) (opaR) [Vibrio sp. NH-UV-68]
ATGGACTCTATAGCGAAAAGACCGCGTACGCGGCTATCTCCGCAAAAACGTAAGCAACAACTGATGGAAATTTCTGTCGA
AGTCTTTGCCCGACGAGGCATAGGCCGTGGCGGCCACGCAGACATTGCAGAAATTGCACAAGTTTCGGTTGCAACCGTGT
TTAACTACTTCCCGACTCGCGAAGATCTAGTCGACGATGTACTTAACTACGTTGTACGTCAGTTCTCAAACTTCTTATCT
GACAATATCGATCTTGACCTTCACGCCAAAGAAAACCTTAGCAACCTGACGTCTGCAATGATCGAATTGGTCATTAACGA
TTGTCACTGGCTGAAGGTATGGTTCGAGTGGAGCGCATCGACTCGCGACGAAGTTTGGCCACTGTTTGTGACCACTAACC
GCACTAACCAATTGCTGGTACAAAATATGTTTGTTAAAGCAATTGAACGTGGCGAAGTGTGCGATCAACATTCACCAGCA
GAGCTTGCAACCTTGTTCCACGGTATCTTCTACTCACTGTTTATCCAAGCAACACGTACACATGATGAAGAGATGATGAA
GAAGCTCACGACAAATTACTTAGACATGCTGTGCATCTACAAGCACGCAAAAAATGGCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(25-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

83.5

97.087

0.811
  hapR Vibrio cholerae C6706

74

97.087

0.718
  hapR Vibrio cholerae strain A1552

74

97.087

0.718