Detailed information NTG0884217

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: RKE25_RS18965
• Genome accession: NZ_CP134867
• Coordinates: 4311825..4313219 (+)
• Length: 464 a.a.
• NCBI ID: WP_311839643.1
• Uniprot ID: A0AA96EKK7
• Organism: Dyella sp. BiH032
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 4306825..4318219

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RKE25_RS18955 (RKE25_18955)	-	4308914..4310608 (+)	1695	WP_311839641.1	trehalase family glycosidase	-
RKE25_RS18960 (RKE25_18960)	-	4310659..4311729 (+)	1071	WP_311839642.1	alpha/beta hydrolase fold domain-containing protein	-
RKE25_RS18965 (RKE25_18965)	pilR	4311825..4313219 (+)	1395	WP_311839643.1	sigma-54 dependent transcriptional regulator	Regulator
RKE25_RS18970 (RKE25_18970)	lptG	4313827..4314930 (-)	1104	WP_311839644.1	LPS export ABC transporter permease LptG	-
RKE25_RS18975 (RKE25_18975)	lptF	4314930..4316039 (-)	1110	WP_311839645.1	LPS export ABC transporter permease LptF	-
RKE25_RS18980 (RKE25_18980)	-	4316141..4317631 (+)	1491	WP_311839646.1	leucyl aminopeptidase	-
RKE25_RS18985 (RKE25_18985)	-	4317703..4318125 (+)	423	WP_311839647.1	DNA polymerase III subunit chi	-

Sequence

Protein

• Length: 464 a.a.
• Molecular weight: 50484.94 Da
• Isoelectric Point: 6.3823

>NTDB_id=884217 RKE25_RS18965 WP_311839643.1 4311825..4313219(+) (pilR) [Dyella sp. BiH032]
MTQQTVLVIDDERDIRELLTITLGRMDLQVDAVGTVSDARRALEERTYDLCFTDMRLPDGNGHEVIELIASKYPDMPVAM
ITAYGNVDAAVSALKAGAFDFVSKPVDIQMLRQLVRTALRLAEEKRAGGATKTASSSDRLIGDSPAMQQVRATIGKLARN
QAPVYIAGESGVGKELVARLIHEQGPRAAGPFVPVNCGAIPSELMESEFFGHRKGSFTGAVSDKEGLFQAANGGTLFLDE
VAELPLHMQVKLLRAIQEKAVRPIGAREEIPVDVRILSATHKNLAALVEQGQFRQDLFYRINVIELRVPPLRERRGDVPL
LAGYILRQLATKSGGSPGRLLPGAQQALESYDFPGNVRELENILERSMAMCEGDQIDVADLMLPQRTPRTEPATPGTPPP
PTAAPQTAAAPTADGGLDDYISNIERTAIIKALEESRYNKTAAAKKLGITFRALRYKLKKLGID

Nucleotide

• Length: 1395 bp

>NTDB_id=884217 RKE25_RS18965 WP_311839643.1 4311825..4313219(+) (pilR) [Dyella sp. BiH032]
ATGACCCAACAGACCGTCCTCGTCATCGACGACGAGCGCGACATCCGCGAACTGCTGACCATCACCCTGGGCCGCATGGA
CCTGCAGGTGGATGCGGTCGGCACGGTGTCGGACGCGCGCCGCGCCCTGGAAGAGCGCACCTACGACCTCTGCTTCACCG
ACATGCGCCTGCCGGACGGCAACGGCCACGAGGTGATCGAGCTCATCGCATCCAAATACCCGGACATGCCGGTGGCGATG
ATCACCGCCTACGGCAACGTCGACGCGGCGGTGAGCGCGCTGAAGGCCGGCGCGTTCGACTTCGTGTCCAAGCCGGTGGA
CATCCAGATGCTGCGCCAGCTGGTGCGCACCGCGCTGCGCCTGGCCGAGGAGAAGCGCGCCGGCGGCGCAACGAAGACGG
CCAGCTCCAGCGACCGCCTGATCGGCGACTCGCCGGCCATGCAGCAGGTCCGCGCCACTATCGGCAAACTGGCGCGCAAC
CAGGCGCCGGTCTACATCGCGGGCGAATCCGGCGTCGGCAAGGAACTGGTCGCCCGCCTCATCCATGAGCAGGGGCCGCG
CGCAGCCGGTCCGTTCGTGCCGGTGAACTGCGGTGCGATCCCGTCGGAACTGATGGAGAGCGAGTTCTTCGGCCACCGCA
AGGGCAGCTTCACCGGCGCCGTGAGCGACAAGGAAGGCCTGTTCCAGGCCGCCAACGGCGGCACGCTGTTCCTCGACGAA
GTGGCCGAGCTGCCCCTGCACATGCAGGTGAAGCTGTTGCGCGCGATCCAGGAAAAGGCCGTGCGCCCGATCGGTGCGCG
CGAGGAGATCCCGGTCGACGTGCGCATCCTGTCGGCCACGCACAAGAATCTTGCCGCGCTGGTCGAACAGGGCCAGTTCC
GCCAGGACCTGTTCTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCCGCGGCGACGTACCGCTG
CTGGCCGGCTACATCCTGCGCCAGCTCGCCACCAAGAGCGGCGGCAGCCCCGGCCGCCTGCTACCCGGCGCGCAGCAGGC
GCTGGAGAGCTACGACTTCCCCGGCAACGTGCGCGAGCTGGAGAACATCCTCGAGCGCTCGATGGCGATGTGCGAAGGCG
ACCAGATCGACGTCGCCGACCTGATGCTGCCCCAGCGCACCCCACGCACCGAACCCGCCACCCCCGGCACACCCCCACCT
CCCACCGCCGCCCCTCAGACCGCCGCCGCGCCGACCGCAGACGGAGGCCTGGACGACTACATCAGCAATATCGAACGCAC
TGCCATCATCAAGGCGCTGGAAGAGTCCCGCTACAACAAGACCGCCGCCGCCAAGAAACTCGGCATCACCTTCCGGGCGC
TGCGATACAAGCTGAAAAAGCTGGGGATCGACTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (422-461)

• Response regulator receiver domain (Response_reg) (6-115)

• Sigma-54 interaction domain (Sigma54_activat) (140-306)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	60.991	100	0.61
pilR	Acinetobacter baumannii strain A118	49.247	100	0.494