Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   RKE25_RS18230 Genome accession   NZ_CP134867
Coordinates   4135137..4135535 (-) Length   132 a.a.
NCBI ID   WP_269320406.1    Uniprot ID   -
Organism   Dyella sp. BiH032     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 4130137..4140535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKE25_RS18215 (RKE25_18215) - 4132047..4134077 (-) 2031 WP_311839505.1 methyl-accepting chemotaxis protein -
  RKE25_RS18220 (RKE25_18220) - 4134192..4134725 (-) 534 WP_311839506.1 chemotaxis protein CheW -
  RKE25_RS18225 (RKE25_18225) - 4134734..4135105 (-) 372 WP_311839507.1 response regulator -
  RKE25_RS18230 (RKE25_18230) pilG 4135137..4135535 (-) 399 WP_269320406.1 response regulator Regulator
  RKE25_RS18235 (RKE25_18235) gshB 4135864..4136847 (+) 984 WP_311839508.1 glutathione synthase -
  RKE25_RS18240 (RKE25_18240) - 4136844..4137710 (+) 867 WP_311839509.1 energy transducer TonB -
  RKE25_RS18245 (RKE25_18245) - 4137824..4138393 (+) 570 WP_311839510.1 YqgE/AlgH family protein -
  RKE25_RS18250 (RKE25_18250) ruvX 4138390..4138851 (+) 462 WP_311839511.1 Holliday junction resolvase RuvX -
  RKE25_RS18255 (RKE25_18255) - 4138848..4139777 (+) 930 WP_311839512.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14548.00 Da        Isoelectric Point: 9.1307

>NTDB_id=884213 RKE25_RS18230 WP_269320406.1 4135137..4135535(-) (pilG) [Dyella sp. BiH032]
MNLNISGNGLAGLKVMVIDDSKTIRRTAETLLKKEGCDVLTAVDGFEALAKISDQKPAIIFVDIMMPRLDGYQTCALIKN
NPQFRSTPVIMLSSKDGLFDKARGRIVGAEQYLTKPFTRDELLGAIHRHVTV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=884213 RKE25_RS18230 WP_269320406.1 4135137..4135535(-) (pilG) [Dyella sp. BiH032]
GTGAACTTGAACATAAGTGGAAATGGCCTGGCCGGTCTGAAGGTCATGGTGATCGACGACTCCAAGACGATCCGCCGCAC
GGCGGAAACCTTGCTCAAGAAGGAAGGTTGCGACGTGCTCACGGCGGTCGACGGATTCGAGGCGCTCGCCAAGATCTCCG
ACCAGAAGCCCGCGATCATCTTCGTCGACATCATGATGCCGCGCCTGGATGGCTATCAGACCTGCGCGCTCATCAAGAAC
AATCCGCAGTTCCGGTCCACCCCGGTGATCATGCTCAGTTCGAAGGACGGCCTCTTCGACAAGGCCCGCGGCCGCATCGT
GGGCGCCGAGCAATATCTGACCAAGCCGTTCACGCGCGACGAACTGCTTGGAGCCATCCATCGTCATGTCACGGTGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(15-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

71.774

93.939

0.674
  vicR Streptococcus mutans UA159

41.88

88.636

0.371