Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   M9H31_RS07870 Genome accession   NZ_CP134839
Coordinates   1668367..1669239 (-) Length   290 a.a.
NCBI ID   WP_002495760.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain ADQBK     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1663367..1674239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9H31_RS07855 (M9H31_07855) xerC 1663669..1664529 (-) 861 WP_002446287.1 tyrosine recombinase XerC -
  M9H31_RS07860 (M9H31_07860) trmFO 1664783..1666090 (-) 1308 WP_002495759.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  M9H31_RS07865 (M9H31_07865) topA 1666115..1668184 (-) 2070 WP_002446285.1 type I DNA topoisomerase -
  M9H31_RS07870 (M9H31_07870) dprA 1668367..1669239 (-) 873 WP_002495760.1 DNA-processing protein DprA Machinery gene
  M9H31_RS07875 (M9H31_07875) sucD 1670030..1670938 (-) 909 WP_002446283.1 succinate--CoA ligase subunit alpha -
  M9H31_RS07880 (M9H31_07880) sucC 1670960..1672126 (-) 1167 WP_002439496.1 ADP-forming succinate--CoA ligase subunit beta -
  M9H31_RS07885 (M9H31_07885) - 1672234..1673004 (-) 771 WP_002489955.1 ribonuclease HII -
  M9H31_RS07890 (M9H31_07890) ylqF 1673009..1673872 (-) 864 WP_002446281.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33950.97 Da        Isoelectric Point: 9.6692

>NTDB_id=884046 M9H31_RS07870 WP_002495760.1 1668367..1669239(-) (dprA) [Staphylococcus epidermidis strain ADQBK]
MIQHTMLKLYWANFTTAQLHHLTRKYPDFLSENVFHQHDMIKRWLTDRNSERLWNKYERFKKLKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYFLPTIGVLEFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPINKYKFPERNRLISGLSRGVFITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILIDYLF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=884046 M9H31_RS07870 WP_002495760.1 1668367..1669239(-) (dprA) [Staphylococcus epidermidis strain ADQBK]
TTGATACAACATACGATGTTAAAACTATATTGGGCAAATTTCACTACAGCACAACTTCATCATCTTACACGTAAATATCC
CGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGATGGCTTACAGATCGTAATTCTGAAAGACTAT
GGAACAAATATGAACGTTTCAAAAAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACG
ACATACTTCGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTCTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGTGGCGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACTTTTTACCAACTATTGGCGTACTTGAATTTGGACATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGAAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCTATAAATAAGTATAAATTTC
CTGAAAGAAACAGACTTATAAGTGGTCTGTCTAGAGGAGTTTTTATAACCGAGGCTGAAGAAAGAAGTGGTAGTCAAATT
ACTATTGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGCAA
TTTACGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATCTTAATTGATTATCTATTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

57.292

99.31

0.569
  dprA Staphylococcus aureus N315

57.292

99.31

0.569