Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   M9H34_RS07755 Genome accession   NZ_CP134835
Coordinates   1639455..1640327 (-) Length   290 a.a.
NCBI ID   WP_001829468.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain ADQBG     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1605089..1666183 1639455..1640327 within 0


Gene organization within MGE regions


Location: 1605089..1666183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9H34_RS07625 (M9H34_07625) rnjB 1606713..1608386 (-) 1674 WP_002457357.1 ribonuclease J2 -
  M9H34_RS07630 (M9H34_07630) pnp 1608754..1610859 (-) 2106 WP_001832554.1 polyribonucleotide nucleotidyltransferase -
  M9H34_RS07635 (M9H34_07635) rpsO 1610991..1611260 (-) 270 WP_002439528.1 30S ribosomal protein S15 -
  M9H34_RS07640 (M9H34_07640) - 1611380..1612351 (-) 972 WP_001832563.1 bifunctional riboflavin kinase/FAD synthetase -
  M9H34_RS07645 (M9H34_07645) truB 1612367..1613284 (-) 918 WP_161387198.1 tRNA pseudouridine(55) synthase TruB -
  M9H34_RS07650 (M9H34_07650) rbfA 1613422..1613772 (-) 351 WP_001829509.1 30S ribosome-binding factor RbfA -
  M9H34_RS07655 (M9H34_07655) infB 1614075..1616237 (-) 2163 WP_002468903.1 translation initiation factor IF-2 -
  M9H34_RS07660 (M9H34_07660) - 1616242..1616559 (-) 318 WP_002439520.1 YlxQ family RNA-binding protein -
  M9H34_RS07665 (M9H34_07665) rnpM 1616559..1616843 (-) 285 WP_001829465.1 RNase P modulator RnpM -
  M9H34_RS07670 (M9H34_07670) nusA 1616861..1618084 (-) 1224 WP_331245566.1 transcription termination factor NusA -
  M9H34_RS07675 (M9H34_07675) rimP 1618105..1618572 (-) 468 WP_002439519.1 ribosome maturation factor RimP -
  M9H34_RS07680 (M9H34_07680) - 1618751..1623061 (-) 4311 WP_002456566.1 PolC-type DNA polymerase III -
  M9H34_RS07685 (M9H34_07685) - 1623311..1625014 (-) 1704 WP_001829513.1 proline--tRNA ligase -
  M9H34_RS07690 (M9H34_07690) rseP 1625033..1626319 (-) 1287 WP_001829501.1 RIP metalloprotease RseP -
  M9H34_RS07695 (M9H34_07695) - 1626553..1627335 (-) 783 WP_001829499.1 phosphatidate cytidylyltransferase -
  M9H34_RS07700 (M9H34_07700) - 1627339..1628109 (-) 771 WP_331245567.1 isoprenyl transferase -
  M9H34_RS07705 (M9H34_07705) frr 1628330..1628884 (-) 555 WP_001829472.1 ribosome recycling factor -
  M9H34_RS07710 (M9H34_07710) pyrH 1628901..1629623 (-) 723 WP_002439511.1 UMP kinase -
  M9H34_RS07715 (M9H34_07715) tsf 1629764..1630642 (-) 879 WP_002439509.1 translation elongation factor Ts -
  M9H34_RS07720 (M9H34_07720) rpsB 1630793..1631581 (-) 789 WP_001832557.1 30S ribosomal protein S2 -
  M9H34_RS07725 (M9H34_07725) codY 1631944..1632714 (-) 771 WP_002439506.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  M9H34_RS07730 (M9H34_07730) hslU 1632738..1634141 (-) 1404 WP_001829474.1 ATP-dependent protease ATPase subunit HslU -
  M9H34_RS07735 (M9H34_07735) hslV 1634210..1634752 (-) 543 WP_001829498.1 ATP-dependent protease subunit HslV -
  M9H34_RS07740 (M9H34_07740) xerC 1634756..1635616 (-) 861 WP_002439503.1 tyrosine recombinase XerC -
  M9H34_RS07745 (M9H34_07745) trmFO 1635871..1637178 (-) 1308 WP_001832560.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  M9H34_RS07750 (M9H34_07750) topA 1637203..1639272 (-) 2070 WP_002489763.1 type I DNA topoisomerase -
  M9H34_RS07755 (M9H34_07755) dprA 1639455..1640327 (-) 873 WP_001829468.1 DNA-processing protein DprA Machinery gene
  M9H34_RS07765 (M9H34_07765) sucD 1641133..1642041 (-) 909 WP_002446283.1 succinate--CoA ligase subunit alpha -
  M9H34_RS07770 (M9H34_07770) sucC 1642063..1643229 (-) 1167 WP_002439496.1 ADP-forming succinate--CoA ligase subunit beta -
  M9H34_RS07775 (M9H34_07775) - 1643337..1644107 (-) 771 WP_001829514.1 ribonuclease HII -
  M9H34_RS07780 (M9H34_07780) ylqF 1644112..1644975 (-) 864 WP_001829495.1 ribosome biogenesis GTPase YlqF -
  M9H34_RS07785 (M9H34_07785) - 1644996..1645145 (-) 150 WP_162154119.1 hypothetical protein -
  M9H34_RS07790 (M9H34_07790) - 1645304..1647904 (+) 2601 WP_002468914.1 YfhO family protein -
  M9H34_RS07795 (M9H34_07795) - 1647897..1650500 (+) 2604 WP_002470232.1 YfhO family protein -
  M9H34_RS07800 (M9H34_07800) rplS 1651030..1651380 (-) 351 WP_002436293.1 50S ribosomal protein L19 -
  M9H34_RS07805 (M9H34_07805) trmD 1651486..1652223 (-) 738 WP_001829466.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  M9H34_RS07810 (M9H34_07810) rimM 1652223..1652726 (-) 504 WP_001832559.1 ribosome maturation factor RimM -
  M9H34_RS07815 (M9H34_07815) rpsP 1652853..1653128 (-) 276 WP_002439483.1 30S ribosomal protein S16 -
  M9H34_RS07820 (M9H34_07820) ffh 1653374..1654741 (-) 1368 WP_001830113.1 signal recognition particle protein -
  M9H34_RS07825 (M9H34_07825) - 1654772..1655104 (-) 333 WP_002457379.1 putative DNA-binding protein -
  M9H34_RS07830 (M9H34_07830) ftsY 1655106..1656332 (-) 1227 WP_161387197.1 signal recognition particle-docking protein FtsY -
  M9H34_RS07835 (M9H34_07835) smc 1656329..1659898 (-) 3570 WP_002468549.1 chromosome segregation protein SMC -
  M9H34_RS07840 (M9H34_07840) rnc 1660025..1660762 (-) 738 WP_002470220.1 ribonuclease III -
  M9H34_RS07845 (M9H34_07845) - 1660877..1661110 (-) 234 WP_001830184.1 acyl carrier protein -
  M9H34_RS07850 (M9H34_07850) fabG 1661337..1662071 (-) 735 WP_001830161.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  M9H34_RS07855 (M9H34_07855) fabD 1662064..1662990 (-) 927 WP_002489765.1 ACP S-malonyltransferase -
  M9H34_RS07860 (M9H34_07860) plsX 1662992..1663969 (-) 978 WP_001830112.1 phosphate acyltransferase PlsX -
  M9H34_RS07865 (M9H34_07865) fapR 1663971..1664531 (-) 561 WP_001830099.1 transcription factor FapR -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33726.62 Da        Isoelectric Point: 9.3618

>NTDB_id=884010 M9H34_RS07755 WP_001829468.1 1639455..1640327(-) (dprA) [Staphylococcus epidermidis strain ADQBG]
MIQHTMLKLYWANFTTAQLHHLTSTYPDFLSENVFHQHDMIKRWLTERNSERLWNKYERFKELKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYLLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPISKHKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILYDYLF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=884010 M9H34_RS07755 WP_001829468.1 1639455..1640327(-) (dprA) [Staphylococcus epidermidis strain ADQBG]
TTGATACAACATACGATGTTAAAACTATATTGGGCAAATTTCACTACGGCACAACTTCATCATCTTACAAGTACATATCC
TGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGGCTAT
GGAACAAATATGAACGTTTCAAAGAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACA
ACATACTTTGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTTTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGCGGTGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACCTATTACCAACTATTGGCGTACTTGGATTTGGCCATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGGAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCTATAAGTAAGCATAAATTTC
CTGAAAGAAACAGGCTTATAAGTGGTCTGTCCAGAGGGGTACTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATC
ACTATCGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGTAA
TTTAAGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATATTATATGATTATCTATTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

56.944

99.31

0.566
  dprA Staphylococcus aureus MW2

56.944

99.31

0.566