Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M9H32_RS04290 Genome accession   NZ_CP134832
Coordinates   892519..892914 (+) Length   131 a.a.
NCBI ID   WP_331245702.1    Uniprot ID   -
Organism   Staphylococcus capitis strain ADQHB     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 887519..897914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9H32_RS04260 (M9H32_04260) atpD 887737..889149 (+) 1413 WP_002435865.1 F0F1 ATP synthase subunit beta -
  M9H32_RS04265 (M9H32_04265) - 889169..889573 (+) 405 WP_002435826.1 F0F1 ATP synthase subunit epsilon -
  M9H32_RS04270 (M9H32_04270) - 889714..889947 (+) 234 WP_002453705.1 DUF1146 family protein -
  M9H32_RS04275 (M9H32_04275) murA 890057..891322 (+) 1266 WP_002435807.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  M9H32_RS04280 (M9H32_04280) fabZ 891367..891804 (+) 438 WP_002435844.1 3-hydroxyacyl-ACP dehydratase FabZ -
  M9H32_RS04285 (M9H32_04285) - 891885..892328 (-) 444 WP_049427281.1 YwpF-like family protein -
  M9H32_RS04290 (M9H32_04290) ssb 892519..892914 (+) 396 WP_331245702.1 single-stranded DNA-binding protein Machinery gene
  M9H32_RS04295 (M9H32_04295) - 893309..894034 (+) 726 WP_002453702.1 transglycosylase family protein -
  M9H32_RS04300 (M9H32_04300) tenA 894329..895018 (+) 690 WP_002435801.1 thiaminase II -
  M9H32_RS04305 (M9H32_04305) thiD 895011..895832 (+) 822 WP_049427284.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  M9H32_RS04310 (M9H32_04310) thiM 895825..896613 (+) 789 WP_002435520.1 hydroxyethylthiazole kinase -
  M9H32_RS04315 (M9H32_04315) thiE 896620..897258 (+) 639 WP_037551262.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15129.02 Da        Isoelectric Point: 5.2691

>NTDB_id=883960 M9H32_RS04290 WP_331245702.1 892519..892914(+) (ssb) [Staphylococcus capitis strain ADQHB]
MLNKIVIVGRLTKDAQIYEKEDSKVATFCVATERNYKDENNEISSDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKTKHNEILSQNQYDEDTFHSDDIEIINI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=883960 M9H32_RS04290 WP_331245702.1 892519..892914(+) (ssb) [Staphylococcus capitis strain ADQHB]
ATGTTAAACAAAATAGTAATAGTAGGAAGGTTGACTAAAGATGCTCAAATTTATGAGAAGGAGGATAGTAAGGTCGCAAC
ATTTTGTGTAGCAACTGAAAGAAATTACAAAGATGAAAATAATGAAATATCAAGTGATTATTTATTGTGTAAAGCTTTCG
GCAAAACAGCAACCAATATCGAAAAATATACTAGTCAAGGTACATTAGTAGGTATAACAGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGACAAACGCATTTTGTAACCGAACTATATGTAGAAACAATTAAATTTATGTCTCCAAAAACTAAACA
TAATGAAATCCTCTCTCAAAATCAATACGATGAAGACACTTTTCATTCAGACGACATTGAAATTATTAATATCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

76.336

100

0.763
  ssb Staphylococcus aureus MW2

75.573

100

0.756