Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   M9H33_RS07655 Genome accession   NZ_CP134828
Coordinates   1618458..1619330 (-) Length   290 a.a.
NCBI ID   WP_023350397.1    Uniprot ID   -
Organism   Staphylococcus capitis strain ADJWO     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1573163..1636679 1618458..1619330 within 0


Gene organization within MGE regions


Location: 1573163..1636679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9H33_RS07475 (M9H33_07475) recA 1574724..1575776 (-) 1053 WP_023350375.1 recombinase RecA Machinery gene
  M9H33_RS07480 (M9H33_07480) - 1575945..1577093 (-) 1149 WP_023350376.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  M9H33_RS07485 (M9H33_07485) pgsA 1577236..1577817 (-) 582 WP_023350377.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  M9H33_RS07490 (M9H33_07490) - 1577845..1578237 (-) 393 WP_002436354.1 helix-turn-helix domain-containing protein -
  M9H33_RS07495 (M9H33_07495) - 1578256..1579083 (-) 828 WP_002436330.1 YmfK family protein -
  M9H33_RS07500 (M9H33_07500) ymfI 1579242..1579949 (-) 708 WP_023350378.1 elongation factor P 5-aminopentanone reductase -
  M9H33_RS07505 (M9H33_07505) yfmH 1579949..1581235 (-) 1287 WP_023350379.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  M9H33_RS07510 (M9H33_07510) yfmF 1581235..1582509 (-) 1275 WP_023350380.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  M9H33_RS07515 (M9H33_07515) - 1582551..1583261 (-) 711 WP_023350381.1 GntR family transcriptional regulator -
  M9H33_RS12515 - 1583264..1584724 (-) 1461 Protein_1449 DNA translocase FtsK -
  M9H33_RS12520 - 1584829..1585684 (-) 856 Protein_1450 DNA translocase FtsK 4TM domain-containing protein -
  M9H33_RS07525 (M9H33_07525) rnjB 1585942..1587615 (-) 1674 WP_002469869.1 ribonuclease J2 -
  M9H33_RS07530 (M9H33_07530) pnp 1587849..1589948 (-) 2100 WP_145350199.1 polyribonucleotide nucleotidyltransferase -
  M9H33_RS07535 (M9H33_07535) rpsO 1590082..1590351 (-) 270 WP_002436359.1 30S ribosomal protein S15 -
  M9H33_RS07540 (M9H33_07540) ribF 1590473..1591444 (-) 972 WP_002436322.1 riboflavin biosynthesis protein RibF -
  M9H33_RS07545 (M9H33_07545) truB 1591460..1592377 (-) 918 WP_023350385.1 tRNA pseudouridine(55) synthase TruB -
  M9H33_RS07550 (M9H33_07550) rbfA 1592526..1592876 (-) 351 WP_002436301.1 30S ribosome-binding factor RbfA -
  M9H33_RS07555 (M9H33_07555) infB 1593033..1595207 (-) 2175 WP_023350386.1 translation initiation factor IF-2 -
  M9H33_RS07560 (M9H33_07560) - 1595212..1595529 (-) 318 WP_002436350.1 L7Ae/L30e/S12e/Gadd45 family ribosomal protein -
  M9H33_RS07565 (M9H33_07565) rnpM 1595526..1595810 (-) 285 WP_002436310.1 RNase P modulator RnpM -
  M9H33_RS07570 (M9H33_07570) nusA 1595827..1597050 (-) 1224 WP_002436342.1 transcription termination factor NusA -
  M9H33_RS07575 (M9H33_07575) rimP 1597071..1597538 (-) 468 WP_002436317.1 ribosome maturation factor RimP -
  M9H33_RS07580 (M9H33_07580) - 1597763..1602073 (-) 4311 WP_087671603.1 PolC-type DNA polymerase III -
  M9H33_RS07585 (M9H33_07585) - 1602329..1604032 (-) 1704 WP_049326556.1 proline--tRNA ligase -
  M9H33_RS07590 (M9H33_07590) rseP 1604052..1605338 (-) 1287 WP_023350389.1 RIP metalloprotease RseP -
  M9H33_RS07595 (M9H33_07595) - 1605578..1606360 (-) 783 WP_002436308.1 phosphatidate cytidylyltransferase -
  M9H33_RS07600 (M9H33_07600) - 1606364..1607134 (-) 771 WP_023350390.1 isoprenyl transferase -
  M9H33_RS07605 (M9H33_07605) frr 1607415..1607969 (-) 555 WP_002436295.1 ribosome recycling factor -
  M9H33_RS07610 (M9H33_07610) pyrH 1607986..1608708 (-) 723 WP_002436299.1 UMP kinase -
  M9H33_RS07615 (M9H33_07615) tsf 1608845..1609723 (-) 879 WP_030064793.1 translation elongation factor Ts -
  M9H33_RS07620 (M9H33_07620) rpsB 1609874..1610662 (-) 789 WP_002436327.1 30S ribosomal protein S2 -
  M9H33_RS07625 (M9H33_07625) codY 1610916..1611689 (-) 774 WP_002436324.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  M9H33_RS07630 (M9H33_07630) hslU 1611712..1613115 (-) 1404 WP_023350392.1 ATP-dependent protease ATPase subunit HslU -
  M9H33_RS07635 (M9H33_07635) hslV 1613199..1613741 (-) 543 WP_023350393.1 ATP-dependent protease subunit HslV -
  M9H33_RS07640 (M9H33_07640) xerC 1613745..1614635 (-) 891 WP_023350394.1 tyrosine recombinase XerC -
  M9H33_RS07645 (M9H33_07645) trmFO 1614872..1616179 (-) 1308 WP_023350395.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  M9H33_RS07650 (M9H33_07650) topA 1616205..1618280 (-) 2076 WP_030064789.1 type I DNA topoisomerase -
  M9H33_RS07655 (M9H33_07655) dprA 1618458..1619330 (-) 873 WP_023350397.1 DNA-processing protein DprA Machinery gene
  M9H33_RS07660 (M9H33_07660) sucD 1619556..1620464 (-) 909 WP_002436344.1 succinate--CoA ligase subunit alpha -
  M9H33_RS07665 (M9H33_07665) sucC 1620486..1621652 (-) 1167 WP_002436291.1 ADP-forming succinate--CoA ligase subunit beta -
  M9H33_RS07670 (M9H33_07670) - 1621760..1622530 (-) 771 WP_023350398.1 ribonuclease HII -
  M9H33_RS07675 (M9H33_07675) ylqF 1622514..1623397 (-) 884 Protein_1481 ribosome biogenesis GTPase YlqF -
  M9H33_RS07680 (M9H33_07680) - 1623677..1626277 (+) 2601 WP_331245499.1 YfhO family protein -
  M9H33_RS07685 (M9H33_07685) - 1626270..1628876 (+) 2607 WP_023350401.1 YfhO family protein -
  M9H33_RS07690 (M9H33_07690) - 1629356..1629562 (+) 207 WP_226859621.1 hypothetical protein -
  M9H33_RS07695 (M9H33_07695) - 1629602..1629940 (+) 339 WP_023350404.1 hypothetical protein -
  M9H33_RS07700 (M9H33_07700) rplS 1630517..1630867 (-) 351 WP_002436293.1 50S ribosomal protein L19 -
  M9H33_RS07705 (M9H33_07705) trmD 1630973..1631710 (-) 738 WP_023350405.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  M9H33_RS07710 (M9H33_07710) rimM 1631710..1632213 (-) 504 WP_023350406.1 ribosome maturation factor RimM -
  M9H33_RS07715 (M9H33_07715) rpsP 1632476..1632751 (-) 276 WP_002453071.1 30S ribosomal protein S16 -
  M9H33_RS07720 (M9H33_07720) ffh 1633179..1634546 (-) 1368 WP_002435148.1 signal recognition particle protein -
  M9H33_RS07725 (M9H33_07725) - 1634576..1634908 (-) 333 WP_002435170.1 putative DNA-binding protein -
  M9H33_RS07730 (M9H33_07730) ftsY 1634895..1636154 (-) 1260 WP_023350407.1 signal recognition particle-docking protein FtsY -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33411.79 Da        Isoelectric Point: 9.7513

>NTDB_id=883943 M9H33_RS07655 WP_023350397.1 1618458..1619330(-) (dprA) [Staphylococcus capitis strain ADJWO]
MIQHTLLKLYWANFATTQVHQFIKEYPEVISENALIQNKMIEDWAKRQTSSTVRRKLSLFKSLNTEVIFQEMTKMNLKYL
TYFDKHYPQLLKEIYDFPYVIFYKGNKQLFNCPHTLAVIGSRKSTLYTTQALEYLFPSFKSLKMTIISGLAYGADSIAHQ
VALKNKLPTIGVLGFGHSYHYPKSSLKTRENIERKGLVISEYPPHSPITRYKFPERNRLISGLARGLLITEAEKISGSQI
TVDCALEQNRNVYVLPGSMFNPMTKSNLLRLQEGAQVVLDECSILSDYIF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=883943 M9H33_RS07655 WP_023350397.1 1618458..1619330(-) (dprA) [Staphylococcus capitis strain ADJWO]
GTGATTCAACACACTTTATTGAAGCTCTATTGGGCTAATTTCGCCACAACGCAAGTTCATCAATTTATTAAAGAATATCC
AGAAGTTATTTCAGAAAACGCACTAATTCAAAATAAGATGATTGAGGATTGGGCTAAAAGACAAACCTCATCCACAGTCA
GGAGAAAATTGAGCTTATTTAAATCACTTAATACAGAAGTTATATTTCAAGAAATGACTAAAATGAACCTCAAATATTTA
ACTTACTTTGATAAACATTATCCTCAATTACTTAAAGAAATTTATGATTTCCCATATGTAATTTTTTATAAAGGAAATAA
ACAACTATTTAATTGTCCTCATACTTTAGCTGTTATAGGCTCAAGAAAGTCAACCTTATATACAACTCAAGCTTTGGAAT
ATCTTTTCCCATCATTTAAATCACTAAAAATGACGATTATTTCAGGATTAGCATATGGTGCAGATAGTATAGCTCACCAA
GTCGCACTAAAAAATAAACTTCCAACAATAGGCGTTCTTGGCTTCGGCCATTCATATCATTATCCTAAATCATCTTTAAA
GACAAGAGAGAATATCGAACGAAAAGGACTAGTTATAAGTGAGTATCCACCTCATTCTCCCATAACCAGATATAAATTTC
CTGAAAGAAATAGATTGATTAGTGGACTCGCTCGGGGTCTATTAATTACAGAAGCAGAGAAAATAAGCGGTAGTCAAATA
ACAGTAGACTGCGCTTTAGAACAAAACCGGAATGTATATGTTTTACCAGGATCAATGTTTAATCCTATGACCAAAAGTAA
TTTACTTAGACTTCAAGAGGGGGCACAAGTCGTTTTAGATGAATGTAGTATTCTTTCAGACTACATTTTCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

59.028

99.31

0.586
  dprA Staphylococcus aureus MW2

59.028

99.31

0.586