Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   M9H35_RS07430 Genome accession   NZ_CP134823
Coordinates   1522030..1522902 (-) Length   290 a.a.
NCBI ID   WP_331245900.1    Uniprot ID   -
Organism   Staphylococcus capitis strain ADJXA     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1517030..1527902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9H35_RS07415 (M9H35_07415) xerC 1517317..1518207 (-) 891 WP_002453085.1 tyrosine recombinase XerC -
  M9H35_RS07420 (M9H35_07420) trmFO 1518444..1519751 (-) 1308 WP_331245899.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  M9H35_RS07425 (M9H35_07425) topA 1519777..1521852 (-) 2076 WP_029625697.1 type I DNA topoisomerase -
  M9H35_RS07430 (M9H35_07430) dprA 1522030..1522902 (-) 873 WP_331245900.1 DNA-processing protein DprA Machinery gene
  M9H35_RS07435 (M9H35_07435) sucD 1523391..1524299 (-) 909 WP_002453081.1 succinate--CoA ligase subunit alpha -
  M9H35_RS07440 (M9H35_07440) sucC 1524321..1525487 (-) 1167 WP_002436291.1 ADP-forming succinate--CoA ligase subunit beta -
  M9H35_RS07445 (M9H35_07445) - 1525595..1526365 (-) 771 WP_002453080.1 ribonuclease HII -
  M9H35_RS07450 (M9H35_07450) ylqF 1526367..1527233 (-) 867 WP_002453079.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33469.51 Da        Isoelectric Point: 9.1538

>NTDB_id=883909 M9H35_RS07430 WP_331245900.1 1522030..1522902(-) (dprA) [Staphylococcus capitis strain ADJXA]
MIQHILLKLYWANFTTTQIHQFIKDYPEVISESPPTQKEMIEDWTIRQTTSTLKKKFNLFKSLDTEVLLQEMSKKNLKFL
TYFDKNYPQLLKEIYDFPYIIFYKGNKQLFNYPHTLAVIGSRKSTSYTTQALEYLFPSFKQLKMTIISGLAYGADSVAHQ
VALKNQLPTIGVLGFGHSYHYPKSTFKTRESVEREGLVISEYLPHSPISRYKFPERNRLISGLARGLLITEAEEISGSQI
TVDCALEQNRNVYVLPGSMFNPMTKSNLLRLQEGAQVVLDESSILSDYNF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=883909 M9H35_RS07430 WP_331245900.1 1522030..1522902(-) (dprA) [Staphylococcus capitis strain ADJXA]
GTGATCCAACATATTTTATTGAAGCTCTATTGGGCTAATTTCACCACCACTCAAATTCATCAATTCATTAAAGATTACCC
TGAAGTTATATCAGAAAGCCCTCCAACTCAAAAAGAAATGATTGAAGATTGGACTATAAGACAAACCACCTCCACATTGA
AGAAAAAATTCAACTTATTTAAATCACTTGATACAGAAGTTCTACTTCAAGAAATGTCAAAAAAGAACCTCAAATTTTTA
ACTTACTTTGATAAAAATTATCCTCAATTACTTAAAGAAATTTATGATTTTCCATATATAATATTTTACAAAGGAAATAA
ACAACTATTTAACTATCCGCATACTTTAGCTGTTATAGGATCAAGAAAGTCCACTTCATATACCACACAAGCATTAGAAT
ATCTATTTCCCTCATTTAAACAACTAAAAATGACGATTATATCAGGATTAGCATACGGTGCAGATAGTGTAGCTCATCAA
GTTGCACTAAAAAATCAACTGCCAACAATAGGAGTTCTTGGTTTTGGACATTCATATCATTATCCTAAATCAACTTTTAA
AACAAGAGAGAGTGTCGAACGAGAAGGGCTCGTTATAAGTGAGTATCTGCCGCATTCTCCTATATCCAGATATAAATTTC
CAGAAAGAAATAGATTGATTAGTGGTCTCGCTCGAGGTTTATTAATTACAGAAGCAGAGGAAATAAGTGGTAGTCAAATA
ACAGTAGATTGCGCTTTAGAACAAAATCGAAATGTATATGTTTTACCAGGATCAATGTTCAATCCTATGACCAAAAGTAA
TTTACTTAGGCTTCAAGAGGGTGCACAAGTAGTTTTAGATGAAAGTAGTATCCTTTCGGACTACAATTTCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

58.333

99.31

0.579
  dprA Staphylococcus aureus N315

58.333

99.31

0.579