Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RNT94_RS07825 Genome accession   NZ_CP134803
Coordinates   1592827..1593222 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA85_2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1587827..1598222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNT94_RS07800 thiE 1588426..1589067 (-) 642 WP_000483161.1 thiamine phosphate synthase -
  RNT94_RS07805 thiM 1589069..1589860 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  RNT94_RS07810 thiD 1589844..1590674 (-) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  RNT94_RS07815 tenA 1590667..1591356 (-) 690 WP_000396068.1 thiaminase II -
  RNT94_RS07820 sceD 1591743..1592438 (-) 696 WP_000751995.1 lytic transglycosylase SceD -
  RNT94_RS07825 ssb 1592827..1593222 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  RNT94_RS07830 - 1593416..1593856 (+) 441 WP_000846746.1 YwpF-like family protein -
  RNT94_RS07835 fabZ 1593913..1594353 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  RNT94_RS07840 murA 1594387..1595652 (-) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  RNT94_RS07845 - 1595763..1595996 (-) 234 WP_000384523.1 DUF1146 family protein -
  RNT94_RS07850 - 1596649..1597053 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=883829 RNT94_RS07825 WP_000932694.1 1592827..1593222(-) (ssb) [Staphylococcus aureus strain SA85_2]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=883829 RNT94_RS07825 WP_000932694.1 1592827..1593222(-) (ssb) [Staphylococcus aureus strain SA85_2]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992