Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   RNT94_RS05465 Genome accession   NZ_CP134803
Coordinates   1137533..1138219 (-) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA85_2     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1132533..1143219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNT94_RS05445 rpsT 1133447..1133698 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  RNT94_RS05450 holA 1133743..1134717 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  RNT94_RS05455 comEC 1134774..1136975 (-) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RNT94_RS05460 - 1136980..1137441 (-) 462 WP_000439690.1 ComE operon protein 2 -
  RNT94_RS05465 comEA 1137533..1138219 (-) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  RNT94_RS05470 - 1138259..1138975 (-) 717 WP_000084838.1 class I SAM-dependent methyltransferase -
  RNT94_RS05475 rsfS 1138978..1139331 (-) 354 WP_001088020.1 ribosome silencing factor -
  RNT94_RS05480 yqeK 1139332..1139916 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  RNT94_RS05485 nadD 1139906..1140475 (-) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  RNT94_RS05490 yhbY 1140478..1140768 (-) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  RNT94_RS05495 aroE 1140772..1141578 (-) 807 WP_000666746.1 shikimate dehydrogenase -
  RNT94_RS05500 yqeH 1141592..1142692 (-) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=883818 RNT94_RS05465 WP_001825349.1 1137533..1138219(-) (comEA) [Staphylococcus aureus strain SA85_2]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=883818 RNT94_RS05465 WP_001825349.1 1137533..1138219(-) (comEA) [Staphylococcus aureus strain SA85_2]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961