Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   RNT94_RS00400 Genome accession   NZ_CP134803
Coordinates   75627..76196 (+) Length   189 a.a.
NCBI ID   WP_000872879.1    Uniprot ID   A0A2S6DF07
Organism   Staphylococcus aureus strain SA85_2     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 70627..81196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNT94_RS00375 cysE 71839..72486 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  RNT94_RS00380 cysS 72470..73870 (+) 1401 WP_000631961.1 cysteine--tRNA ligase -
  RNT94_RS00385 - 73863..74267 (+) 405 WP_000370181.1 Mini-ribonuclease 3 -
  RNT94_RS00390 rlmB 74275..75021 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  RNT94_RS00395 - 75021..75545 (+) 525 WP_000664738.1 NYN domain-containing protein -
  RNT94_RS00400 sigH 75627..76196 (+) 570 WP_000872879.1 sigma-70 family RNA polymerase sigma factor Regulator
  RNT94_RS00405 rpmG 76311..76454 (+) 144 WP_311892070.1 50S ribosomal protein L33 -
  RNT94_RS00410 secE 76510..76692 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  RNT94_RS00415 nusG 76705..77253 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  RNT94_RS00420 rplK 77434..77856 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  RNT94_RS00425 rplA 78064..78756 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  RNT94_RS00430 rplJ 79028..79528 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  RNT94_RS00435 rplL 79571..79939 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  RNT94_RS00440 - 80114..80722 (+) 609 WP_000020293.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.02 Da        Isoelectric Point: 9.7681

>NTDB_id=883796 RNT94_RS00400 WP_000872879.1 75627..76196(+) (sigH) [Staphylococcus aureus strain SA85_2]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGKQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=883796 RNT94_RS00400 WP_000872879.1 75627..76196(+) (sigH) [Staphylococcus aureus strain SA85_2]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAAAGCAGCCTTTCACAAATTATGTTCAGTGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S6DF07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979