Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   RNU01_RS11100 Genome accession   NZ_CP134801
Coordinates   2202537..2203106 (-) Length   189 a.a.
NCBI ID   WP_000872876.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA73_2     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2197537..2208106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNU01_RS11060 - 2198011..2198619 (-) 609 WP_000020302.1 class I SAM-dependent methyltransferase -
  RNU01_RS11065 rplL 2198794..2199162 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  RNU01_RS11070 rplJ 2199205..2199705 (-) 501 WP_001273087.1 50S ribosomal protein L10 -
  RNU01_RS11075 rplA 2199977..2200669 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  RNU01_RS11080 rplK 2200877..2201299 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  RNU01_RS11085 nusG 2201480..2202028 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  RNU01_RS11090 secE 2202041..2202223 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  RNU01_RS11095 rpmG 2202279..2202422 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  RNU01_RS11100 sigH 2202537..2203106 (-) 570 WP_000872876.1 sigma-70 family RNA polymerase sigma factor Regulator
  RNU01_RS11105 - 2203187..2203711 (-) 525 WP_000664738.1 NYN domain-containing protein -
  RNU01_RS11110 rlmB 2203711..2204457 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  RNU01_RS11115 - 2204465..2204869 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  RNU01_RS11120 cysS 2204862..2206262 (-) 1401 WP_000631973.1 cysteine--tRNA ligase -
  RNU01_RS11125 cysE 2206246..2206893 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.96 Da        Isoelectric Point: 9.6015

>NTDB_id=883788 RNU01_RS11100 WP_000872876.1 2202537..2203106(-) (sigH) [Staphylococcus aureus strain SA73_2]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=883788 RNU01_RS11100 WP_000872876.1 2202537..2203106(-) (sigH) [Staphylococcus aureus strain SA73_2]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

99.471

100

0.995
  sigH Staphylococcus aureus N315

98.413

100

0.984