Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   RNU01_RS06280 Genome accession   NZ_CP134801
Coordinates   1197658..1198728 (+) Length   356 a.a.
NCBI ID   WP_311904905.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA73_2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1192658..1203728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNU01_RS06250 - 1193081..1194544 (+) 1464 WP_001017867.1 rhomboid family intramembrane serine protease -
  RNU01_RS06255 - 1194525..1194728 (+) 204 WP_000087561.1 YqgQ family protein -
  RNU01_RS06260 - 1194725..1195711 (+) 987 WP_000161314.1 ROK family glucokinase -
  RNU01_RS06265 - 1195711..1196040 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  RNU01_RS06270 - 1196037..1196660 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  RNU01_RS06275 comGA 1196712..1197686 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  RNU01_RS06280 comGB 1197658..1198728 (+) 1071 WP_311904905.1 competence type IV pilus assembly protein ComGB Machinery gene
  RNU01_RS06285 comGC 1198742..1199053 (+) 312 WP_311904906.1 competence type IV pilus major pilin ComGC Machinery gene
  RNU01_RS06290 comGD 1199031..1199477 (+) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  RNU01_RS06295 comGE 1199464..1199763 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  RNU01_RS06300 comGF 1199681..1200178 (+) 498 WP_029642894.1 competence type IV pilus minor pilin ComGF Machinery gene
  RNU01_RS06305 - 1200275..1200421 (+) 147 WP_001789879.1 hypothetical protein -
  RNU01_RS06310 - 1200411..1200935 (+) 525 WP_001015119.1 shikimate kinase -
  RNU01_RS06315 gcvT 1201094..1202185 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  RNU01_RS06320 gcvPA 1202205..1203551 (+) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41417.82 Da        Isoelectric Point: 10.0606

>NTDB_id=883772 RNU01_RS06280 WP_311904905.1 1197658..1198728(+) (comGB) [Staphylococcus aureus strain SA73_2]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFALYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=883772 RNU01_RS06280 WP_311904905.1 1197658..1198728(+) (comGB) [Staphylococcus aureus strain SA73_2]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGACTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCGCTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAAATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATCTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(28-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

99.719

100

0.997
  comGB Staphylococcus aureus N315

99.719

100

0.997