Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   RNU01_RS06050 Genome accession   NZ_CP134801
Coordinates   1152118..1152804 (+) Length   228 a.a.
NCBI ID   WP_001793467.1    Uniprot ID   A0A641AAY3
Organism   Staphylococcus aureus strain SA73_2     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1147118..1157804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNU01_RS06015 yqeH 1147645..1148745 (+) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -
  RNU01_RS06020 aroE 1148759..1149565 (+) 807 WP_000666748.1 shikimate dehydrogenase -
  RNU01_RS06025 yhbY 1149569..1149859 (+) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  RNU01_RS06030 nadD 1149862..1150431 (+) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  RNU01_RS06035 yqeK 1150421..1151005 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  RNU01_RS06040 rsfS 1151006..1151359 (+) 354 WP_001088022.1 ribosome silencing factor -
  RNU01_RS06045 - 1151362..1152078 (+) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  RNU01_RS06050 comEA 1152118..1152804 (+) 687 WP_001793467.1 ComEA family DNA-binding protein Machinery gene
  RNU01_RS06055 - 1152896..1153357 (+) 462 WP_000439693.1 ComE operon protein 2 -
  RNU01_RS06060 comEC 1153362..1155566 (+) 2205 WP_311904903.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RNU01_RS06065 holA 1155623..1156597 (+) 975 WP_001282568.1 DNA polymerase III subunit delta -
  RNU01_RS06070 rpsT 1156642..1156893 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25786.50 Da        Isoelectric Point: 9.6753

>NTDB_id=883768 RNU01_RS06050 WP_001793467.1 1152118..1152804(+) (comEA) [Staphylococcus aureus strain SA73_2]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDNALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=883768 RNU01_RS06050 WP_001793467.1 1152118..1152804(+) (comEA) [Staphylococcus aureus strain SA73_2]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATAATG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCATGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A641AAY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

100

100

1
  comEA Staphylococcus aureus N315

97.368

100

0.974