Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RNU01_RS03195 Genome accession   NZ_CP134801
Coordinates   638450..638845 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA73_2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 633450..643845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNU01_RS03165 - 634652..635056 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  RNU01_RS03170 - 635451..635543 (+) 93 WP_001790611.1 hypothetical protein -
  RNU01_RS03175 - 635675..635908 (+) 234 WP_000384523.1 DUF1146 family protein -
  RNU01_RS03180 murA 636019..637284 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  RNU01_RS03185 fabZ 637318..637758 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  RNU01_RS03190 - 637816..638256 (-) 441 WP_000846746.1 YwpF-like family protein -
  RNU01_RS03195 ssb 638450..638845 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  RNU01_RS03200 sceD 639234..639929 (+) 696 WP_311904892.1 lytic transglycosylase SceD -
  RNU01_RS03205 tenA 640315..641004 (+) 690 WP_000396067.1 thiaminase II -
  RNU01_RS03210 thiD 640997..641827 (+) 831 WP_000594960.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  RNU01_RS03215 thiM 641811..642602 (+) 792 WP_001108482.1 hydroxyethylthiazole kinase -
  RNU01_RS03220 thiE 642604..643245 (+) 642 WP_000483156.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=883757 RNU01_RS03195 WP_000932694.1 638450..638845(+) (ssb) [Staphylococcus aureus strain SA73_2]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=883757 RNU01_RS03195 WP_000932694.1 638450..638845(+) (ssb) [Staphylococcus aureus strain SA73_2]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992