Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   RI132_RS12055 Genome accession   NZ_CP134783
Coordinates   2619954..2620571 (+) Length   205 a.a.
NCBI ID   WP_011079558.1    Uniprot ID   Q7MHU7
Organism   Vibrio vulnificus strain GCU-01     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2614954..2625571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI132_RS12035 (RI132_12035) - 2615267..2616190 (-) 924 WP_011079562.1 ABC transporter ATP-binding protein -
  RI132_RS12040 (RI132_12040) - 2616357..2618027 (-) 1671 WP_013571147.1 SulP family inorganic anion transporter -
  RI132_RS12045 (RI132_12045) can 2618269..2618937 (+) 669 WP_026060803.1 carbonate dehydratase -
  RI132_RS12050 (RI132_12050) hpt 2619032..2619562 (-) 531 WP_011079559.1 hypoxanthine phosphoribosyltransferase -
  RI132_RS12055 (RI132_12055) opaR 2619954..2620571 (+) 618 WP_011079558.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  RI132_RS12060 (RI132_12060) lpdA 2620705..2622132 (-) 1428 WP_011079557.1 dihydrolipoyl dehydrogenase -
  RI132_RS12065 (RI132_12065) aceF 2622390..2624297 (-) 1908 WP_072616568.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23717.02 Da        Isoelectric Point: 6.1461

>NTDB_id=883730 RI132_RS12055 WP_011079558.1 2619954..2620571(+) (opaR) [Vibrio vulnificus strain GCU-01]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHAKENIANITNAMIELVVQDNHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHNPE
DLANLFHGICYSLFVQANRTNNTAELSKLVSSYLDMLCIYKREHE

Nucleotide


Download         Length: 618 bp        

>NTDB_id=883730 RI132_RS12055 WP_011079558.1 2619954..2620571(+) (opaR) [Vibrio vulnificus strain GCU-01]
ATGGACTCAATCGCAAAGAGACCGCGAACTCGCTTATCTCCGCTAAAACGTAAACAGCAGCTCATGGAAATTGCACTGGA
AGTGTTTGCTCGTCGTGGCATTGGCCGCGGTGGTCACGCAGACATCGCTGAAATTGCGCAAGTTTCTGTGGCGACCGTCT
TCAACTACTTCCCAACTCGCGAAGATCTTGTAGACGAAGTGCTTAACCATGTCGTTCGTCAGTTTTCTAATTTCCTATCT
GACAACATCGATTTGGATCTTCACGCTAAAGAAAACATCGCCAACATCACCAACGCAATGATTGAGCTTGTGGTGCAAGA
CAATCACTGGTTGAAAGTTTGGTTCGAGTGGAGTGCGTCGACGCGTGATGAAGTTTGGCCTCTGTTTGTCACCACCAACC
GAACTAATCAATTGCTGGTACAAAACATGTTCATCAAAGCCATTGAGCGTGGTGAAGTGTGTGACCAACACAACCCAGAA
GATTTGGCGAACTTGTTCCACGGCATTTGTTACTCGCTGTTTGTTCAAGCAAACCGTACCAACAATACCGCAGAGCTCAG
CAAACTGGTCAGCAGCTACTTAGACATGCTATGCATCTATAAACGCGAGCACGAATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MHU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

92.157

99.512

0.917
  hapR Vibrio cholerae C6706

72.864

97.073

0.707
  hapR Vibrio cholerae strain A1552

72.864

97.073

0.707