Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   RND59_RS03360 Genome accession   NZ_CP134780
Coordinates   739929..740549 (+) Length   206 a.a.
NCBI ID   WP_059119918.1    Uniprot ID   A0A1R4L9G7
Organism   Vibrio ruber strain HNIBRBA4764     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 734929..745549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RND59_RS03340 (RND59_03340) - 736019..736789 (-) 771 WP_311845966.1 ABC transporter permease -
  RND59_RS03345 (RND59_03345) - 736811..737788 (-) 978 WP_311845968.1 ABC transporter ATP-binding protein -
  RND59_RS03350 (RND59_03350) can 738205..738873 (+) 669 WP_311845970.1 carbonate dehydratase -
  RND59_RS03355 (RND59_03355) hpt 738953..739486 (-) 534 WP_059119919.1 hypoxanthine phosphoribosyltransferase -
  RND59_RS03360 (RND59_03360) opaR 739929..740549 (+) 621 WP_059119918.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  RND59_RS03365 (RND59_03365) lpdA 740692..742116 (-) 1425 WP_311845972.1 dihydrolipoyl dehydrogenase -
  RND59_RS03370 (RND59_03370) aceF 742360..744246 (-) 1887 WP_311845974.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 24123.48 Da        Isoelectric Point: 6.2222

>NTDB_id=883658 RND59_RS03360 WP_059119918.1 739929..740549(+) (opaR) [Vibrio ruber strain HNIBRBA4764]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTHVVHQFSNFL
ADNIDVDSYIKDNLYHLTHKMTKLVFEDCHWLKVWFEWSASTRDEVWPLFVSTNHTNRLLVKNMFVNAIERGDVSDHYDS
EHLVTLFLGIFYSLFVQVNRLQDQKEIDDLVNSYLDMLCIYNNRRA

Nucleotide


Download         Length: 621 bp        

>NTDB_id=883658 RND59_RS03360 WP_059119918.1 739929..740549(+) (opaR) [Vibrio ruber strain HNIBRBA4764]
ATGGACGCTTCAATAGAAAAACGCCCTCGTACACGATTATCACCTCAGAAACGTAAACTTCAGTTAATGGAAATTGCGCT
TGAAGTTTTCGCCAAACGAGGTATCGGACGTGGTGGACATGCAGATATCGCTGAGATTGCTCAGGTTTCTGTTGCAACTG
TATTTAACTATTTCCCAACGCGTGAGGATTTAGTTGATGATGTGCTCACTCATGTCGTTCACCAATTCTCAAACTTCCTC
GCAGACAATATTGATGTAGACAGTTATATCAAAGATAACCTCTATCATCTCACACATAAAATGACAAAATTGGTATTTGA
AGATTGTCATTGGCTGAAAGTGTGGTTTGAGTGGAGTGCATCAACTCGCGATGAAGTCTGGCCGCTATTCGTATCGACCA
ACCATACGAACCGCCTGCTGGTGAAAAACATGTTTGTCAACGCAATCGAACGCGGTGATGTCAGCGATCATTATGATTCT
GAGCACTTAGTCACCCTGTTCCTCGGGATTTTCTACTCTCTGTTTGTTCAAGTAAACCGTTTACAAGATCAAAAAGAGAT
TGATGATCTGGTGAACAGCTATCTGGACATGTTATGCATTTATAACAACCGTCGGGCTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R4L9G7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

75.879

96.602

0.733
  hapR Vibrio cholerae C6706

73.892

98.544

0.728
  hapR Vibrio cholerae strain A1552

73.892

98.544

0.728