Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   RNI18_RS13770 Genome accession   NZ_CP134775
Coordinates   2765688..2766377 (+) Length   229 a.a.
NCBI ID   WP_197080391.1    Uniprot ID   -
Organism   Bacillus velezensis strain KB21     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2760688..2771377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNI18_RS13745 (RNI18_13745) degS 2760972..2762135 (+) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  RNI18_RS13750 (RNI18_13750) degU 2762212..2762901 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  RNI18_RS13755 (RNI18_13755) - 2762999..2763847 (+) 849 WP_044052857.1 DegV family protein -
  RNI18_RS13760 (RNI18_13760) comFA 2763955..2765340 (+) 1386 WP_046560106.1 DEAD/DEAH box helicase Machinery gene
  RNI18_RS13765 (RNI18_13765) - 2765398..2765682 (+) 285 WP_003151389.1 late competence development ComFB family protein -
  RNI18_RS13770 (RNI18_13770) comFC 2765688..2766377 (+) 690 WP_197080391.1 phosphoribosyltransferase family protein Machinery gene
  RNI18_RS13775 (RNI18_13775) - 2766451..2766870 (+) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  RNI18_RS13780 (RNI18_13780) flgM 2766940..2767206 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  RNI18_RS13785 (RNI18_13785) - 2767221..2767703 (+) 483 WP_003151394.1 flagellar protein FlgN -
  RNI18_RS13790 (RNI18_13790) flgK 2767719..2769236 (+) 1518 WP_043867468.1 flagellar hook-associated protein FlgK -
  RNI18_RS13795 (RNI18_13795) flgL 2769248..2770165 (+) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  RNI18_RS13800 (RNI18_13800) - 2770256..2770825 (+) 570 WP_024085861.1 DUF6470 family protein -
  RNI18_RS13805 (RNI18_13805) fliW 2770855..2771286 (+) 432 WP_003151399.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25340.04 Da        Isoelectric Point: 8.4899

>NTDB_id=883597 RNI18_RS13770 WP_197080391.1 2765688..2766377(+) (comFC) [Bacillus velezensis strain KB21]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEDPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKHSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=883597 RNI18_RS13770 WP_197080391.1 2765688..2766377(+) (comFC) [Bacillus velezensis strain KB21]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGACCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGCACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598