Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   RNI18_RS09375 Genome accession   NZ_CP134775
Coordinates   1920682..1921080 (+) Length   132 a.a.
NCBI ID   WP_043866822.1    Uniprot ID   -
Organism   Bacillus velezensis strain KB21     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1915682..1926080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNI18_RS09355 (RNI18_09355) - 1918081..1918443 (-) 363 WP_014304320.1 helix-turn-helix domain-containing protein -
  RNI18_RS09360 (RNI18_09360) hxlA 1918675..1919310 (+) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  RNI18_RS09365 (RNI18_09365) hxlB 1919307..1919864 (+) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  RNI18_RS09370 (RNI18_09370) nucA/comI 1920223..1920660 (+) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  RNI18_RS09375 (RNI18_09375) nin/comJ 1920682..1921080 (+) 399 WP_043866822.1 competence protein ComJ Regulator
  RNI18_RS09380 (RNI18_09380) - 1921121..1921339 (-) 219 Protein_1838 family 1 glycosylhydrolase -
  RNI18_RS20825 - 1921371..1921616 (-) 246 WP_109567708.1 family 1 glycosylhydrolase -
  RNI18_RS09385 (RNI18_09385) - 1921558..1921833 (-) 276 WP_369719109.1 YckD family protein -
  RNI18_RS09390 (RNI18_09390) - 1921950..1922384 (-) 435 WP_021494203.1 RDD family protein -
  RNI18_RS09395 (RNI18_09395) - 1922399..1923535 (-) 1137 WP_048368274.1 zinc-dependent alcohol dehydrogenase -
  RNI18_RS09400 (RNI18_09400) - 1923600..1924802 (-) 1203 WP_025853783.1 GTP-binding protein -
  RNI18_RS09405 (RNI18_09405) - 1924955..1925080 (+) 126 Protein_1844 hypothetical protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15014.99 Da        Isoelectric Point: 4.6564

>NTDB_id=883580 RNI18_RS09375 WP_043866822.1 1920682..1921080(+) (nin/comJ) [Bacillus velezensis strain KB21]
MNKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVLSYEKKATVPF
EAVKDGIEIESVMSKRLFFNIPKGRYSLTCYSVPAEISDLHADTYIIDADAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=883580 RNI18_RS09375 WP_043866822.1 1920682..1921080(+) (nin/comJ) [Bacillus velezensis strain KB21]
TTGAATAAATCATGGAAACCGCAAGAACTGGCCATTTCGTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTCGAAGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACTATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTTTAATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGACGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

76.744

97.727

0.75