Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   RMV17_RS21695 Genome accession   NZ_CP134772
Coordinates   4870776..4873010 (-) Length   744 a.a.
NCBI ID   WP_311882466.1    Uniprot ID   -
Organism   Pseudomonas sp. VD-NE ins     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4865776..4878010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMV17_RS21660 murB 4866156..4867175 (-) 1020 WP_311882456.1 UDP-N-acetylmuramate dehydrogenase -
  RMV17_RS21665 - 4867172..4867636 (-) 465 WP_311882458.1 low molecular weight protein-tyrosine-phosphatase -
  RMV17_RS21670 kdsB 4867636..4868400 (-) 765 WP_034155367.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RMV17_RS21675 - 4868397..4868582 (-) 186 WP_003174668.1 Trm112 family protein -
  RMV17_RS21680 lpxK 4868604..4869614 (-) 1011 WP_311882461.1 tetraacyldisaccharide 4'-kinase -
  RMV17_RS21685 - 4869614..4870042 (-) 429 WP_007908223.1 ExbD/TolR family protein -
  RMV17_RS21690 exbB 4870039..4870674 (-) 636 WP_007908216.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RMV17_RS21695 comA 4870776..4873010 (-) 2235 WP_311882466.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RMV17_RS21700 - 4873147..4873665 (+) 519 WP_034155370.1 DUF2062 domain-containing protein -
  RMV17_RS21705 - 4873813..4874592 (-) 780 WP_008087860.1 ABC transporter permease -
  RMV17_RS21710 - 4874589..4875521 (-) 933 WP_102900039.1 ABC transporter ATP-binding protein -
  RMV17_RS21715 - 4875645..4876268 (-) 624 WP_311882471.1 glutathione S-transferase -
  RMV17_RS21720 - 4876312..4876971 (-) 660 WP_311882473.1 transglutaminase family protein -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 82002.09 Da        Isoelectric Point: 9.1649

>NTDB_id=883475 RMV17_RS21695 WP_311882466.1 4870776..4873010(-) (comA) [Pseudomonas sp. VD-NE ins]
MRTGMMALAVGLLAPVFMPALPPVWLMLLLPVAALMLLPFRSYPLAFLLLGFTWASVGAQWALNDCLPTELDGETRWLEG
RVVGLPQNSDGVVRFELADARSRHEELPSLVRLAWYGGPPVNSGERWRLAVKLKRAAGLRNPDAFDYEAWLLAQRIGATG
TIKDGQRLSEARWAWRDSIRQRLLSVDAQGRSGALAALVLGDGSGLSREDWQILQDTGTVHLLVISGQHIGLLAAVMYML
VAGLARFGLWPLRWPWLPWACGLAFAAALGYGLLAGFDVPVQRACVMVGLVLLWRLRFLHLGAWWPLLLAFNAVLLLDPL
ASLRPGFWLSFTAVAVLIFTFGGRLGAWRWWQTWTRAQWLIAIGLCPVLIALNLPISLSGPLANLLAVPWISLVALPPAL
LGTLLLPVPYVGEGLLWLAGGLIDWLFRTLALIAGQWPAWTAPSISSWVWILGSLGALLLLLPRGVPLRPLGWPLLLILV
VPPRERLDEGLADVWQIDVGQGLAILIRTRHHTLLYDAGPRFGDFDLGERVVLPALRKLSVDNLDLMLLSHADADHAGGA
LAIARGMPVARVLSGDPPGLPAELNAEACESGQQWQWDGVRFQLWMWADAQDSNQRSCVLQIEANGERLLLTGDIDVHAE
RVLLDSPLAVPTQWLQAPHHGSRSSSSMALLKALKPESVLISRGHGNSFGHPHPTVLARYRKQGLRIYDSAEQGAIQLQL
GRFQAPWTMRHQRRFWRDPPALAR

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=883475 RMV17_RS21695 WP_311882466.1 4870776..4873010(-) (comA) [Pseudomonas sp. VD-NE ins]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTCTGCTGGCCCCGGTTTTTATGCCGGCATTACCGCCGGTCTGGTTGAT
GCTGTTGCTGCCGGTGGCGGCTTTGATGTTGCTGCCGTTTCGCAGCTATCCGTTGGCGTTTTTGCTGTTGGGTTTCACTT
GGGCCAGCGTCGGTGCGCAATGGGCGTTGAATGATTGTTTGCCGACTGAACTGGATGGCGAAACCCGCTGGCTCGAAGGA
CGGGTCGTCGGTTTGCCGCAGAACAGCGACGGCGTGGTGCGTTTCGAACTGGCTGATGCGCGCTCGCGTCACGAAGAACT
GCCATCGCTGGTGCGGCTTGCCTGGTACGGCGGGCCACCGGTCAACAGCGGCGAGCGTTGGCGATTGGCGGTCAAACTCA
AGCGTGCGGCTGGTTTACGCAATCCGGACGCTTTCGATTATGAGGCGTGGCTGCTGGCGCAACGCATCGGCGCCACCGGC
ACGATCAAGGACGGCCAACGTCTGAGCGAAGCGCGCTGGGCCTGGCGCGACAGTATTCGTCAGCGTTTGCTGAGCGTGGA
TGCGCAGGGGCGAAGCGGCGCACTGGCGGCGCTGGTGCTGGGCGACGGTTCGGGACTCAGTCGTGAGGATTGGCAGATTC
TGCAGGACACCGGCACCGTGCACTTGCTGGTGATTTCCGGTCAGCACATCGGGTTGCTGGCGGCGGTGATGTACATGCTG
GTCGCCGGATTGGCCCGTTTTGGCCTGTGGCCGCTGCGCTGGCCCTGGCTGCCGTGGGCCTGTGGTCTGGCATTTGCGGC
GGCGCTCGGTTATGGCCTGCTCGCCGGATTCGACGTGCCGGTACAGCGCGCCTGCGTGATGGTCGGTCTGGTGCTGTTGT
GGCGCCTGCGCTTTCTTCATCTCGGTGCGTGGTGGCCGTTGTTGCTGGCGTTCAATGCGGTGCTCTTGCTCGATCCGCTG
GCCAGTCTGCGCCCCGGTTTCTGGTTGTCCTTTACGGCTGTTGCAGTGTTGATCTTCACATTTGGCGGTCGACTGGGCGC
GTGGCGTTGGTGGCAAACCTGGACGCGGGCGCAGTGGTTGATTGCCATCGGTTTATGCCCGGTACTGATTGCGCTGAACC
TGCCGATCAGTTTGAGCGGGCCACTGGCAAATTTGCTCGCGGTGCCTTGGATCAGTCTGGTGGCGCTGCCGCCGGCACTC
CTCGGGACTTTATTGCTGCCAGTGCCGTATGTCGGCGAAGGACTGCTGTGGCTGGCCGGCGGCTTGATCGATTGGCTGTT
TCGCACACTGGCGCTGATTGCCGGGCAATGGCCTGCATGGACAGCGCCGTCGATATCGAGCTGGGTGTGGATTCTCGGCA
GTCTCGGTGCCTTGCTGTTGCTATTGCCCCGCGGCGTGCCGCTGCGCCCACTGGGCTGGCCGTTGCTGCTGATTCTAGTG
GTACCGCCGCGCGAGCGATTGGACGAGGGATTGGCCGATGTTTGGCAGATCGATGTCGGGCAGGGCCTGGCAATCCTGAT
CCGAACCCGGCATCACACGCTGCTCTACGACGCCGGCCCGCGTTTTGGCGATTTCGATCTCGGTGAACGCGTGGTGCTAC
CGGCCTTGCGCAAACTCAGCGTGGACAATCTCGATCTGATGCTGCTCAGTCACGCCGACGCCGATCATGCCGGCGGTGCG
CTGGCGATTGCGCGGGGTATGCCGGTCGCGCGGGTACTCAGCGGCGATCCGCCGGGGCTACCTGCTGAATTGAATGCTGA
AGCCTGCGAGAGCGGCCAGCAATGGCAATGGGACGGCGTGCGTTTTCAACTGTGGATGTGGGCGGACGCCCAGGACAGTA
ACCAGCGCTCCTGCGTGTTGCAGATCGAGGCCAATGGCGAGCGACTGCTGCTGACCGGCGATATCGATGTCCATGCCGAG
CGCGTTCTGCTCGACAGTCCTTTGGCCGTGCCGACGCAATGGCTGCAAGCGCCCCATCATGGCAGCCGCAGTTCGTCATC
CATGGCGCTGCTCAAGGCGCTAAAGCCTGAGTCCGTGCTGATCTCCCGAGGCCACGGCAATTCCTTCGGCCATCCACACC
CGACCGTGCTGGCGCGTTATCGCAAACAAGGCCTGCGCATCTATGACAGCGCCGAGCAGGGCGCCATTCAGCTACAACTG
GGTCGCTTCCAAGCGCCGTGGACGATGCGTCATCAGCGGCGTTTCTGGCGTGATCCGCCCGCACTGGCCCGCTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-685)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(22-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.989

96.237

0.606
  comA Ralstonia pseudosolanacearum GMI1000

33.689

100

0.382