Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   RJT26_RS07655 Genome accession   NZ_CP134714
Coordinates   1615137..1616378 (-) Length   413 a.a.
NCBI ID   WP_005684320.1    Uniprot ID   -
Organism   Lacticaseibacillus rhamnosus strain LR6     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1610137..1621378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJT26_RS07650 - 1613383..1615113 (-) 1731 WP_005684319.1 proline--tRNA ligase -
  RJT26_RS07655 eeP 1615137..1616378 (-) 1242 WP_005684320.1 RIP metalloprotease RseP Regulator
  RJT26_RS07660 - 1616395..1617183 (-) 789 WP_005711688.1 phosphatidate cytidylyltransferase -
  RJT26_RS07665 - 1617219..1617971 (-) 753 WP_005684322.1 isoprenyl transferase -
  RJT26_RS07670 - 1618359..1618895 (+) 537 WP_014569708.1 helix-turn-helix domain-containing protein -
  RJT26_RS07675 - 1618859..1619740 (+) 882 WP_225423306.1 IS3 family transposase -
  RJT26_RS07680 frr 1619817..1620374 (-) 558 WP_005684323.1 ribosome recycling factor -
  RJT26_RS07685 pyrH 1620374..1621093 (-) 720 WP_005684324.1 UMP kinase -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45253.82 Da        Isoelectric Point: 7.4658

>NTDB_id=883068 RJT26_RS07655 WP_005684320.1 1615137..1616378(-) (eeP) [Lacticaseibacillus rhamnosus strain LR6]
MTTIIAFIVIFCILVVVHEFGHFYFAKRSGILVREFSIGMGPKLWASHKNNTTYTLRLLPLGGYVRMAGWQDEEDEIKPG
TMLSIILNDAGTVTRINASDKTTLAGGMPVQVSRVDLVKDLVIEGYPNGDEEKLERWSVDHDATIIEEDGTEVQIAPEDV
QFQNAPVWRRLIVNFAGPMNNFILAILTFIIYGLMFGVQVLNTNQIGTVLPGYPAAQAGLKSNATIQAIDGEKIHSFTDL
SSKVSKQAGKSVTFTVKEHGKTQNVVIKPNKDGKIGVEALIEKSPARAFTYGFTQTWDLAVRTWDVLKSMVTGGFSLNKL
AGPVGIYTMTSQSAKGGLQGLLFFMGYLSLGLGISNLLPIPVLDGGKILLNLIELIRRKPLKPETEGVVTMVGLGLMVLL
MLAVTINDIMRYF

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=883068 RJT26_RS07655 WP_005684320.1 1615137..1616378(-) (eeP) [Lacticaseibacillus rhamnosus strain LR6]
ATGACCACAATCATTGCCTTTATTGTTATCTTCTGCATTCTTGTGGTGGTTCACGAGTTTGGCCATTTTTATTTTGCCAA
GCGCAGCGGAATATTAGTACGTGAGTTTTCGATTGGCATGGGGCCTAAGCTATGGGCCTCACATAAGAATAATACGACCT
ATACCTTGCGCTTGTTGCCACTGGGCGGATATGTACGTATGGCTGGCTGGCAGGATGAGGAAGATGAAATCAAGCCTGGG
ACCATGCTGAGTATTATCCTGAATGATGCCGGTACAGTGACGCGGATTAATGCCAGTGATAAAACAACGCTGGCAGGTGG
CATGCCGGTACAAGTAAGCCGCGTAGACCTCGTTAAAGACTTGGTGATTGAAGGCTACCCTAATGGCGACGAAGAGAAAC
TGGAGCGTTGGTCGGTTGACCATGATGCCACGATTATTGAAGAAGATGGCACCGAAGTTCAAATTGCGCCAGAAGATGTC
CAATTTCAAAATGCCCCGGTTTGGCGGCGTCTAATTGTTAACTTTGCCGGTCCGATGAATAATTTTATTCTTGCCATTTT
GACCTTTATTATTTACGGGTTGATGTTTGGCGTGCAGGTCTTAAATACCAATCAAATCGGAACGGTACTGCCCGGTTATC
CTGCTGCTCAAGCCGGGCTTAAGTCAAATGCCACAATTCAGGCGATTGATGGTGAAAAGATTCATTCTTTTACTGATCTT
TCCAGCAAAGTCAGCAAACAGGCCGGTAAGTCGGTGACGTTTACAGTTAAAGAGCATGGCAAAACGCAAAATGTGGTCAT
CAAGCCTAACAAGGATGGCAAGATCGGTGTGGAAGCACTCATCGAAAAATCACCGGCACGGGCGTTTACGTATGGTTTCA
CCCAAACCTGGGATTTAGCTGTGCGCACTTGGGATGTCCTCAAATCCATGGTGACTGGCGGCTTTTCGCTTAATAAGTTA
GCTGGGCCGGTCGGAATTTATACCATGACCAGTCAAAGTGCTAAAGGTGGATTGCAGGGATTGCTATTCTTTATGGGATA
CTTAAGTCTCGGCTTGGGAATCAGCAATTTGTTGCCAATCCCGGTTCTGGATGGTGGTAAAATTTTACTGAATCTCATTG
AACTGATTCGGCGCAAACCGTTGAAGCCTGAAACAGAAGGTGTTGTCACCATGGTTGGCCTCGGGTTGATGGTACTCCTG
ATGCTCGCCGTGACGATTAATGATATTATGCGTTACTTTTAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_6)

(206-257)

Peptidase family M50 (Peptidase_M50)

(6-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

48.821

100

0.501
  eeP Streptococcus thermophilus LMD-9

48.585

100

0.499