Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RJT26_RS00065 Genome accession   NZ_CP134714
Coordinates   11890..12480 (+) Length   196 a.a.
NCBI ID   WP_005709832.1    Uniprot ID   A0A0J6XXP0
Organism   Lacticaseibacillus rhamnosus strain LR6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6890..17480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJT26_RS00035 - 9370..9468 (+) 99 Protein_6 single-stranded DNA-binding protein -
  RJT26_RS00040 - 9848..10075 (+) 228 WP_012807316.1 hypothetical protein -
  RJT26_RS00045 - 10170..10682 (+) 513 WP_223804855.1 PedC/BrcD family bacteriocin maturation disulfide isomerase -
  RJT26_RS00050 - 10810..10896 (-) 87 Protein_9 deoxyribose-phosphate aldolase -
  RJT26_RS00055 ssb 11006..11437 (+) 432 WP_005690380.1 single-stranded DNA-binding protein -
  RJT26_RS00060 rpsF 11564..11860 (+) 297 WP_005685677.1 30S ribosomal protein S6 -
  RJT26_RS00065 ssb 11890..12480 (+) 591 WP_005709832.1 single-stranded DNA-binding protein Machinery gene
  RJT26_RS00070 rpsR 12572..12808 (+) 237 WP_003568467.1 30S ribosomal protein S18 -
  RJT26_RS00075 - 13202..13708 (-) 507 WP_005685670.1 type 1 glutamine amidotransferase domain-containing protein -
  RJT26_RS00080 - 14019..15497 (+) 1479 WP_014568874.1 cytochrome ubiquinol oxidase subunit I -
  RJT26_RS00085 cydB 15490..16509 (+) 1020 WP_014568875.1 cytochrome d ubiquinol oxidase subunit II -
  RJT26_RS00090 - 16549..16743 (+) 195 WP_005707490.1 hypothetical protein -
  RJT26_RS00095 - 16822..17079 (-) 258 WP_015764802.1 hypothetical protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20932.66 Da        Isoelectric Point: 4.9056

>NTDB_id=883055 RJT26_RS00065 WP_005709832.1 11890..12480(+) (ssb) [Lacticaseibacillus rhamnosus strain LR6]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSLVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPSNAPSSNPGQ
NPAAGQNQGNNGNAANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 591 bp        

>NTDB_id=883055 RJT26_RS00065 WP_005709832.1 11890..12480(+) (ssb) [Lacticaseibacillus rhamnosus strain LR6]
ATGCTTAACAGTGTTGCATTGACAGGTCGTTTAACCAGAGATGTTGACTTGCGCTATACGCAAAGTGGGACAGCTGTCGG
TTCATTCACTTTGGCCGTTGATCGCCAGTTCCGCAGTGCAAACGGCGAACGGGAAACCGACTTCATTAATTGTGTGATCT
GGCGTAAGTCAGCGGAGAATTTCGCTAACTTCACCAAGAAGGGATCATTGGTTGGTGTTGAAGGTCACATTCAAACACGT
ACTTACGATAATGCGCAAGGACAGAAAGTTTATGTGACTGAAGTTGTCGTTGAAAACTTTGCGTTACTGGAGTCACGGGC
AACCACCCAACAGCGGCCATCCGAACCTGCTAATCCTGCAGGTCAGGGAAATCAGAACTATGGCGGGGGACAGCAGTTTG
GCAACAACCAGCCGCAAAATCCGCCTAGCTTTGGCTCTCAAGGCGCCCCAAGTAATGCACCATCATCGAATCCGGGACAA
AACCCGGCAGCAGGTCAGAACCAAGGTAACAACGGTAATGCTGCTAATCCTGATCCATTTGCCAATAACGGCAAACCGAT
CGACATTTCCGATGATGATCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J6XXP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.204

100

0.602
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.749

100

0.505