Detailed information NTG0883003

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: RMA73_RS06785
• Genome accession: NZ_CP134704
• Coordinates: 1454861..1456249 (+)
• Length: 462 a.a.
• NCBI ID: WP_058360092.1
• Uniprot ID: -
• Organism: Xanthomonas translucens pv. translucens strain CO236
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1449861..1461249

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RMA73_RS06770 (RMA73_06795)	sucD	1450873..1451745 (-)	873	WP_009580520.1	succinate--CoA ligase subunit alpha	-
RMA73_RS06775 (RMA73_06800)	sucC	1451769..1452932 (-)	1164	WP_053833739.1	ADP-forming succinate--CoA ligase subunit beta	-
RMA73_RS06780 (RMA73_06805)	-	1453173..1454786 (+)	1614	WP_003477089.1	ATP-binding protein	-
RMA73_RS06785 (RMA73_06810)	pilR	1454861..1456249 (+)	1389	WP_058360092.1	sigma-54 dependent transcriptional regulator	Regulator
RMA73_RS06790 (RMA73_06815)	-	1456438..1456620 (+)	183	WP_003477093.1	YhfG family protein	-
RMA73_RS06795 (RMA73_06820)	-	1456617..1457234 (+)	618	WP_003477095.1	Fic family protein	-
RMA73_RS06800 (RMA73_06825)	pilB	1457244..1458980 (-)	1737	WP_058360091.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RMA73_RS06805 (RMA73_06830)	-	1459706..1460164 (-)	459	WP_058360090.1	pilin	-

Sequence

Protein

• Length: 462 a.a.
• Molecular weight: 49859.26 Da
• Isoelectric Point: 6.5828

>NTDB_id=883003 RMA73_RS06785 WP_058360092.1 1454861..1456249(+) (pilR) [Xanthomonas translucens pv. translucens strain CO236]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIARHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDLHVLRGLVKHALELNNSERAAPPAPPPEQASRLLGASAAMDVLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLAMQVKLLRAIQEKSVRPVGASIEVPTDVRILSATHKDLADLVADGRFRHDLYYRINVIELRVPPLRDRGGDLP
QLATAILTRLAKSHGRATPLLSPSALDALNRYAFPGNVRELENILERALAMAEDDQISAADLHLPQPGNSARAAAEATPA
LPPGVVDIDPTSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1389 bp

>NTDB_id=883003 RMA73_RS06785 WP_058360092.1 1454861..1456249(+) (pilR) [Xanthomonas translucens pv. translucens strain CO236]
ATGAACGAAACCCGAAGCGCCCTGGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTGTTGACCCTGGGCAGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCCCGCGAACTGCTGGCGAGCAATCCCTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCGCCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGATCTGGCGGTGGAAGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACCTGCACGTGCTGCGCGGCCTGGTCAAGCATGCGCTGGAACTCAACAACAGCGAACGCGCCGCGCCGCCGGCACCGC
CGCCGGAACAGGCCAGCCGCCTGCTTGGCGCCTCGGCGGCGATGGACGTGCTGCGCGCCACCATCGCCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCCTCGGCGAGTCCGGCGTCGGCAAGGAGCTCGTCGCGCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAACTGATGGAAAGCGAATTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACCAGGCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCCTGTTCCTGGAC
GAAGTGGCCGAATTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAATCGGTGCGCCCGGTCGGCGC
CTCGATCGAGGTGCCCACCGATGTGCGCATCCTCTCGGCCACGCACAAGGACCTGGCCGACCTGGTCGCCGACGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGACCGCGGCGGCGACCTGCCG
CAACTGGCCACGGCGATCCTGACACGGCTGGCCAAGAGCCATGGCCGGGCCACCCCGCTGCTGTCGCCGTCCGCGCTGGA
CGCGCTGAACCGCTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTCGAGCGCGCCCTGGCAATGGCCGAAG
ACGACCAGATCAGCGCCGCCGACCTGCACCTGCCGCAGCCCGGCAACAGCGCCCGCGCCGCGGCCGAAGCCACGCCCGCA
CTGCCGCCCGGCGTGGTCGACATCGACCCGACCTCCTCGGCCCTGCCCTCCTACATCGAACAGCTCGAGCGCGCCGCGAT
CCAGAAGGCGCTGGAAGAGAACCGCTGGAACAAGACCCGCACCGCCGCCCAGCTCGGCATCACCTTCCGTGCGCTGCGCT
ACAAACTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (8-114)

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

• Bacterial regulatory protein, Fis family (HTH_8) (419-459)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.527	99.351	0.621
pilR	Acinetobacter baumannii strain A118	47.084	100	0.472