Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   RMA82_RS05810 Genome accession   NZ_CP134702
Coordinates   1378153..1379541 (+) Length   462 a.a.
NCBI ID   WP_003466378.1    Uniprot ID   -
Organism   Xanthomonas translucens pv. undulosa strain CO237     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1369936..1380526 1378153..1379541 within 0


Gene organization within MGE regions


Location: 1369936..1380526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMA82_RS05780 (RMA82_05780) - 1369936..1372215 (+) 2280 WP_155617115.1 hypothetical protein -
  RMA82_RS05785 (RMA82_05785) - 1372328..1372633 (-) 306 WP_003466368.1 PQQ-binding-like beta-propeller repeat protein -
  RMA82_RS05790 (RMA82_05790) - 1372582..1373880 (-) 1299 WP_230938758.1 hypothetical protein -
  RMA82_RS05795 (RMA82_05795) sucD 1374165..1375037 (-) 873 WP_003466372.1 succinate--CoA ligase subunit alpha -
  RMA82_RS05800 (RMA82_05800) sucC 1375061..1376224 (-) 1164 WP_003466374.1 ADP-forming succinate--CoA ligase subunit beta -
  RMA82_RS05805 (RMA82_05805) - 1376465..1378078 (+) 1614 WP_003466376.1 ATP-binding protein -
  RMA82_RS05810 (RMA82_05810) pilR 1378153..1379541 (+) 1389 WP_003466378.1 sigma-54 dependent transcriptional regulator Regulator
  RMA82_RS05815 (RMA82_05815) - 1379730..1379912 (+) 183 WP_003466380.1 YhfG family protein -
  RMA82_RS05820 (RMA82_05820) - 1379909..1380526 (+) 618 WP_047325190.1 Fic family protein -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49892.38 Da        Isoelectric Point: 6.7311

>NTDB_id=882988 RMA82_RS05810 WP_003466378.1 1378153..1379541(+) (pilR) [Xanthomonas translucens pv. undulosa strain CO237]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIARHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDLHVLRGLVKHALELNNRERAAPPAPPPEQASRLLGASAAMDVLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLAMQVKLLRAIQEKSARPVGASIEVPTDVRILSATHKDLADLVADGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAILARLAKSHGRATPLLSPSALDALNRYPFPGNVRELENILERALAMAEEDQISAADLHLPQPGNSARVAAEAAPA
LPPGVVDIDPTSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=882988 RMA82_RS05810 WP_003466378.1 1378153..1379541(+) (pilR) [Xanthomonas translucens pv. undulosa strain CO237]
ATGAACGAAACCCGAAGCGCCCTGGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTGCTGACCCTGGGCAGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCCCGCGAACTGCTGGCGAGCAATCCCTATGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCGCCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTCAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACCTCCACGTGCTGCGCGGCCTGGTCAAGCATGCGCTGGAACTCAACAACCGCGAACGCGCCGCGCCGCCAGCGCCGC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGCCTCGGCGGCAATGGACGTGCTGCGCGCCACCATCGCCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCCTCGGCGAATCCGGCGTCGGCAAGGAGTTGGTCGCGCGCACCATCCATGAGCAGGGCGC
ACGCGCGGCCGGGCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAACTAATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACCAGGCCGGACTGTTCCAGGCCGCGCACGGCGGCACGCTGTTCCTGGAC
GAAGTGGCCGAGCTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAATCGGCGCGCCCGGTGGGCGC
CTCGATCGAGGTGCCCACCGACGTGCGCATCCTCTCGGCCACGCACAAGGACCTGGCCGACCTGGTCGCCGACGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAATGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCGATCCTGGCACGGCTGGCCAAGAGCCATGGCCGGGCCACCCCGCTGCTGTCGCCGTCGGCGCTGGA
CGCGCTGAACCGCTACCCCTTCCCTGGCAACGTGCGCGAACTGGAGAACATCCTTGAGCGCGCCCTGGCAATGGCCGAAG
AGGACCAGATCAGCGCCGCCGATCTGCACCTGCCGCAGCCCGGCAACAGCGCCCGCGTCGCGGCCGAAGCCGCGCCCGCG
CTGCCGCCCGGCGTGGTCGACATCGACCCGACCTCCTCGGCCCTGCCCTCCTACATCGAACAGCTCGAGCGCGCCGCGAT
CCAGAAGGCGCTGGAAGAGAACCGCTGGAACAAGACCCGCACCGCCGCCCAGCTCGGCATCACCTTCCGTGCGCTGCGCT
ACAAACTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.309

99.351

0.619
  pilR Acinetobacter baumannii strain A118

47.198

100

0.474