Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   RLE12_RS10680 Genome accession   NZ_CP134695
Coordinates   2297831..2298466 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain TJM4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2292831..2303466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLE12_RS10665 - 2293550..2294794 (+) 1245 WP_003113987.1 lipoprotein-releasing ABC transporter permease subunit -
  RLE12_RS10670 - 2294882..2295415 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  RLE12_RS10675 comA 2295530..2297758 (+) 2229 WP_323317102.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RLE12_RS10680 exbB 2297831..2298466 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RLE12_RS10685 - 2298463..2298903 (+) 441 WP_003091161.1 biopolymer transporter ExbD -
  RLE12_RS10690 lpxK 2298903..2299901 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  RLE12_RS10695 - 2299939..2300124 (+) 186 WP_003091157.1 Trm112 family protein -
  RLE12_RS10700 kdsB 2300124..2300888 (+) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RLE12_RS10705 - 2300888..2301352 (+) 465 WP_004350898.1 low molecular weight protein-tyrosine-phosphatase -
  RLE12_RS10710 murB 2301349..2302368 (+) 1020 WP_003106928.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=882937 RLE12_RS10680 WP_003091163.1 2297831..2298466(+) (exbB) [Pseudomonas aeruginosa strain TJM4]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=882937 RLE12_RS10680 WP_003091163.1 2297831..2298466(+) (exbB) [Pseudomonas aeruginosa strain TJM4]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81