Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   RLE12_RS10675 Genome accession   NZ_CP134695
Coordinates   2295530..2297758 (+) Length   742 a.a.
NCBI ID   WP_323317102.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain TJM4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2290530..2302758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLE12_RS10650 - 2290852..2291451 (-) 600 WP_003105196.1 PilZ domain-containing protein -
  RLE12_RS10655 - 2291554..2292804 (+) 1251 WP_003091170.1 lipoprotein-releasing ABC transporter permease subunit -
  RLE12_RS10660 lolD 2292797..2293480 (+) 684 WP_003091168.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  RLE12_RS10665 - 2293550..2294794 (+) 1245 WP_003113987.1 lipoprotein-releasing ABC transporter permease subunit -
  RLE12_RS10670 - 2294882..2295415 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  RLE12_RS10675 comA 2295530..2297758 (+) 2229 WP_323317102.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RLE12_RS10680 exbB 2297831..2298466 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RLE12_RS10685 - 2298463..2298903 (+) 441 WP_003091161.1 biopolymer transporter ExbD -
  RLE12_RS10690 lpxK 2298903..2299901 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  RLE12_RS10695 - 2299939..2300124 (+) 186 WP_003091157.1 Trm112 family protein -
  RLE12_RS10700 kdsB 2300124..2300888 (+) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RLE12_RS10705 - 2300888..2301352 (+) 465 WP_004350898.1 low molecular weight protein-tyrosine-phosphatase -
  RLE12_RS10710 murB 2301349..2302368 (+) 1020 WP_003106928.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 79587.88 Da        Isoelectric Point: 11.8089

>NTDB_id=882936 RLE12_RS10675 WP_323317102.1 2295530..2297758(+) (comA) [Pseudomonas aeruginosa strain TJM4]
MGGTVHAPGIASPRRGAAGPALPGGIAVGRLAAGHGRRRTVAAVRPAVLAGVVPARVRLGLRLGASRPGRTPGRRAGWSH
GRVVDLPASGEGVTRFRLEEVRAARGVLLPERLRLSWRGAPPLMGGERWRLAVTLKRPRGLVNAAGFDYEAWLLAQRVGA
VGTVKAGQRLQPASGLDAWRDAWRQRLLAVDAQGRGAALAALVLGDGSGLSAAEWRMFQDTGTVHLMVISGSHISLLAGM
LYGLVAALHRLGCWPRRLPWLPCACALGLLGAWSYGLMAGFEVPVRRACLMVSLALVWRLRFRHLGLLTPLLATLVLVLL
VEPLASLQAGFWLSFLAVALLLWLFAGRLGRWRWWAAWGRAQWGMALGLAMPLLALGLPLSLSGAPANLLAVPWIELLVV
PPALAGSLLLWVPGLGEGLLRAAGVSLDLLFRALGLLAGLAEAWQPPAAAAWSVALGMLGALCWLAPAGLPLRALGAALL
LPALLPSSPPVEWGRAEVRVLDVGQGLAVLVRTREHVLLYDSGARQGAFDMGERVVVPVLRSLDLRRLDGLLLSHADNDH
AGGAPTVASRFPPVWLVSGEPARLPSPLFADSCDERSWSWDGVVFEQWAWAQAGDSNDRSCVLRVEADGEVLLLTGDISR
AAEHAWLARQADPRVDWLLAPHHGSRSSSGVAFVLRTRPRHVLVSRGWRNAFGHPHGEVMERYARVAAQVHDTARDGALT
FLLGSRGGARRERDSAHFWREK

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=882936 RLE12_RS10675 WP_323317102.1 2295530..2297758(+) (comA) [Pseudomonas aeruginosa strain TJM4]
ATGGGAGGAACCGTTCATGCGCCTGGGATTGCCAGCCCTCGCCGCGGGGCTGCTGGCCCTGCGCTTCCTGGCGGAATTGC
CGTCGGTCGGCTGGCTGCTGGGCATGGCCGCCGCCGGACTGTTGCTGCTGTTCGGCCGGCTGTACTGGCTGGGGTTGTTC
CTGCTCGGGTTCGCCTGGGCCTGCGGCTCGGCGCAAGTCGCCCTGGACGGACGCCTGGCCGCCGAGCTGGATGGTCGCAC
GGGCGTGTGGTCGATCTGCCGGCGAGCGGCGAGGGCGTCACGCGCTTCCGGCTGGAGGAGGTCCGCGCTGCGCGGGGCGT
GCTTCTTCCCGAGCGTCTGCGCCTGAGCTGGCGCGGCGCGCCGCCGCTGATGGGCGGCGAACGCTGGCGCCTGGCGGTGA
CCCTGAAACGCCCCCGCGGCCTGGTGAACGCGGCGGGTTTCGACTACGAGGCCTGGTTGTTGGCGCAGCGGGTCGGTGCT
GTGGGCACGGTGAAGGCGGGCCAGCGCCTGCAGCCGGCCAGCGGCCTGGATGCCTGGCGCGATGCCTGGCGCCAGCGCCT
GCTGGCGGTCGACGCACAGGGGCGCGGCGCCGCCCTGGCGGCGCTGGTGCTGGGGGATGGCTCGGGGTTGAGCGCGGCCG
AGTGGCGAATGTTCCAGGACACCGGCACCGTGCATCTGATGGTCATCTCCGGTTCGCATATCTCGTTGCTGGCGGGGATG
CTCTATGGCCTGGTGGCGGCCTTGCATCGCCTGGGCTGCTGGCCGCGGCGCCTGCCCTGGCTGCCCTGTGCCTGCGCCCT
GGGTTTGCTTGGTGCCTGGAGCTACGGGTTGATGGCGGGTTTCGAGGTCCCGGTGCGGCGCGCCTGCCTGATGGTCAGCC
TGGCGCTGGTCTGGCGCCTGCGTTTCCGCCACCTGGGCTTGCTGACCCCGCTGCTGGCAACGCTGGTGCTGGTCTTGCTG
GTCGAGCCGCTGGCCAGCCTGCAGGCGGGGTTCTGGCTGTCGTTCCTGGCGGTTGCCCTGCTGCTCTGGCTGTTCGCCGG
GCGCCTTGGGCGCTGGCGCTGGTGGGCGGCCTGGGGGCGGGCGCAGTGGGGGATGGCGCTGGGGCTGGCGATGCCGCTGC
TGGCGCTGGGCCTGCCGTTGAGCCTGAGCGGAGCGCCGGCCAACCTGCTGGCGGTGCCTTGGATCGAACTGCTGGTAGTG
CCCCCGGCCCTGGCGGGGAGCCTGCTGCTGTGGGTGCCCGGGCTGGGCGAGGGGCTGCTTCGCGCCGCTGGCGTTTCGCT
GGACCTGCTGTTTCGTGCGCTTGGCCTGCTGGCGGGCCTGGCCGAGGCCTGGCAGCCACCCGCCGCAGCGGCCTGGAGCG
TAGCGCTGGGCATGCTCGGCGCGCTCTGCTGGCTGGCGCCGGCTGGCTTGCCGTTGCGTGCCCTCGGTGCCGCGTTGCTA
CTGCCGGCATTGTTGCCGTCATCGCCGCCTGTCGAATGGGGGCGGGCGGAAGTGCGGGTGCTGGACGTCGGCCAGGGGCT
GGCCGTGCTGGTGCGTACCCGAGAGCATGTCTTGCTCTATGACAGCGGTGCGCGGCAGGGGGCGTTCGACATGGGCGAGC
GGGTGGTGGTGCCGGTGCTGCGCAGCCTGGACCTGCGGCGCCTGGACGGCCTGTTGCTGAGCCATGCCGACAACGACCAT
GCAGGCGGTGCTCCTACGGTCGCTTCCCGATTCCCGCCGGTTTGGCTGGTCAGCGGCGAACCCGCGCGCCTGCCTTCGCC
GTTGTTCGCGGACAGCTGCGACGAGCGGAGCTGGTCCTGGGATGGCGTGGTTTTCGAACAGTGGGCATGGGCACAGGCCG
GCGACAGCAACGACCGCTCCTGTGTGCTGAGGGTCGAGGCCGATGGCGAAGTCCTGCTGCTGACCGGGGACATCTCGCGT
GCGGCCGAGCATGCCTGGCTGGCGCGACAGGCCGATCCCCGGGTCGACTGGTTGCTGGCGCCGCATCATGGCAGCCGCAG
TTCCTCCGGAGTCGCCTTCGTGTTGCGTACGCGGCCTCGCCATGTGCTGGTCTCGCGAGGTTGGCGCAACGCCTTCGGCC
ATCCCCATGGCGAAGTGATGGAGCGTTACGCGAGGGTCGCCGCGCAGGTCCACGACACGGCACGCGACGGTGCCCTGACG
TTTCTCCTCGGAAGCCGTGGCGGCGCACGCCGGGAGCGTGATTCGGCGCACTTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(79-169)

Competence protein (Competence)

(202-465)

Metallo-beta-lactamase superfamily (Lactamase_B)

(502-667)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.445

90.162

0.527