Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RL452_RS10280 Genome accession   NZ_CP134620
Coordinates   2082667..2083062 (-) Length   131 a.a.
NCBI ID   WP_000932698.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Sa9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2077667..2088062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RL452_RS10255 (RL452_10245) thiE 2078128..2078769 (-) 642 WP_000483166.1 thiamine phosphate synthase -
  RL452_RS10260 (RL452_10250) thiM 2078771..2079562 (-) 792 WP_001108490.1 hydroxyethylthiazole kinase -
  RL452_RS10265 (RL452_10255) thiD 2079546..2080376 (-) 831 WP_045158410.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  RL452_RS10270 (RL452_10260) tenA 2080369..2081058 (-) 690 WP_000396070.1 thiaminase II -
  RL452_RS10275 (RL452_10265) sceD 2081583..2082278 (-) 696 WP_000751995.1 lytic transglycosylase SceD -
  RL452_RS10280 (RL452_10270) ssb 2082667..2083062 (-) 396 WP_000932698.1 single-stranded DNA-binding protein Machinery gene
  RL452_RS10285 (RL452_10275) - 2083256..2083696 (+) 441 WP_000846748.1 YwpF-like family protein -
  RL452_RS10290 (RL452_10280) fabZ 2083753..2084193 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  RL452_RS10295 (RL452_10285) murA 2084227..2085492 (-) 1266 WP_000358003.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  RL452_RS10300 (RL452_10290) - 2085603..2085836 (-) 234 WP_000384523.1 DUF1146 family protein -
  RL452_RS10305 (RL452_10295) - 2085968..2086045 (-) 78 Protein_1985 hypothetical protein -
  RL452_RS10310 (RL452_10300) - 2086360..2086764 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15060.13 Da        Isoelectric Point: 5.6824

>NTDB_id=882456 RL452_RS10280 WP_000932698.1 2082667..2083062(-) (ssb) [Staphylococcus aureus strain Sa9]
MLNKIVIVGRMTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=882456 RL452_RS10280 WP_000932698.1 2082667..2083062(-) (ssb) [Staphylococcus aureus strain Sa9]
ATGCTAAATAAAATCGTAATTGTCGGGAGAATGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCGAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

99.237

100

0.992
  ssb Staphylococcus aureus MW2

98.473

100

0.985