Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   RL452_RS07735 Genome accession   NZ_CP134620
Coordinates   1590642..1591328 (-) Length   228 a.a.
NCBI ID   WP_078062662.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Sa9     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1585642..1596328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RL452_RS07715 (RL452_07705) rpsT 1586554..1586805 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  RL452_RS07720 (RL452_07710) holA 1586850..1587824 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  RL452_RS07725 (RL452_07715) - 1587881..1590084 (-) 2204 Protein_1513 DNA internalization-related competence protein ComEC/Rec2 -
  RL452_RS07730 (RL452_07720) - 1590089..1590550 (-) 462 WP_000439693.1 ComE operon protein 2 -
  RL452_RS07735 (RL452_07725) comEA 1590642..1591328 (-) 687 WP_078062662.1 ComEA family DNA-binding protein Machinery gene
  RL452_RS07740 (RL452_07730) - 1591368..1592084 (-) 717 WP_000084837.1 class I SAM-dependent methyltransferase -
  RL452_RS07745 (RL452_07735) rsfS 1592087..1592440 (-) 354 WP_001088020.1 ribosome silencing factor -
  RL452_RS07750 (RL452_07740) yqeK 1592441..1593025 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  RL452_RS07755 (RL452_07745) nadD 1593015..1593584 (-) 570 WP_000725166.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  RL452_RS07760 (RL452_07750) yhbY 1593587..1593877 (-) 291 WP_000955237.1 ribosome assembly RNA-binding protein YhbY -
  RL452_RS07765 (RL452_07755) aroE 1593881..1594687 (-) 807 WP_000666755.1 shikimate dehydrogenase -
  RL452_RS07770 (RL452_07760) yqeH 1594701..1595801 (-) 1101 WP_001280147.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25894.64 Da        Isoelectric Point: 9.4934

>NTDB_id=882445 RL452_RS07735 WP_078062662.1 1590642..1591328(-) (comEA) [Staphylococcus aureus strain Sa9]
MVLLYQFLLRYKDFLTQWKLYIISTVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNYK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GDTNNTKINLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=882445 RL452_RS07735 WP_078062662.1 1590642..1591328(-) (comEA) [Staphylococcus aureus strain Sa9]
GTGGTTTTATTGTATCAATTTTTATTACGATATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTACTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTACAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGGACACAAATAATACTAAAATAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.93

100

0.969
  comEA Staphylococcus aureus N315

96.93

100

0.969