Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RL452_RS05905 Genome accession   NZ_CP134620
Coordinates   1211320..1212192 (+) Length   290 a.a.
NCBI ID   WP_045158019.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Sa9     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1206320..1217192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RL452_RS05885 (RL452_05880) ylqF 1207158..1208042 (+) 885 WP_000236717.1 ribosome biogenesis GTPase YlqF -
  RL452_RS05890 (RL452_05885) - 1208026..1208793 (+) 768 WP_000176398.1 ribonuclease HII -
  RL452_RS05895 (RL452_05890) sucC 1208902..1210068 (+) 1167 WP_001020798.1 ADP-forming succinate--CoA ligase subunit beta -
  RL452_RS05900 (RL452_05895) sucD 1210090..1210998 (+) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  RL452_RS05905 (RL452_05900) dprA 1211320..1212192 (+) 873 WP_045158019.1 DNA-processing protein DprA Machinery gene
  RL452_RS05910 (RL452_05905) topA 1212366..1214441 (+) 2076 WP_011382258.1 type I DNA topoisomerase -
  RL452_RS05915 (RL452_05910) trmFO 1214597..1215904 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33297.54 Da        Isoelectric Point: 8.5425

>NTDB_id=882434 RL452_RS05905 WP_045158019.1 1211320..1212192(+) (dprA) [Staphylococcus aureus strain Sa9]
MLNHILLKLIWSRFTTAQIHLLLKTFPSCCEVDEYERMHILENFCKLLADKKIDAKVNRYKEISVDEIETTIQKTQLNYI
TCFDHNYPYLLKETYNYPIILFYKRNINHLSYSHTLAVVGSRLSGDYTLKALNHLFASFQQMSFCVVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=882434 RL452_RS05905 WP_045158019.1 1211320..1212192(+) (dprA) [Staphylococcus aureus strain Sa9]
ATGTTAAATCACATTTTACTTAAATTAATTTGGAGTCGTTTTACTACTGCACAAATACATCTACTTTTAAAAACTTTTCC
AAGTTGTTGTGAAGTAGACGAATATGAACGAATGCATATTCTAGAAAATTTTTGTAAGCTTTTAGCGGATAAAAAAATAG
ATGCTAAAGTTAACCGTTACAAGGAAATTTCTGTTGATGAAATTGAAACAACAATTCAGAAAACCCAATTAAATTATATA
ACTTGTTTTGATCATAATTATCCCTATTTATTAAAAGAAACTTACAATTATCCTATCATTTTGTTCTATAAAAGGAATAT
TAACCACCTTAGTTATTCGCACACTTTAGCTGTCGTTGGGTCACGATTATCAGGCGACTATACTTTAAAGGCATTGAATC
ATCTCTTCGCTTCATTTCAACAAATGAGTTTCTGTGTTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGAGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

65.017

100

0.679
  dprA Staphylococcus aureus N315

66.207

100

0.662