Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RL453_RS10655 Genome accession   NZ_CP134618
Coordinates   2197985..2198380 (+) Length   131 a.a.
NCBI ID   WP_000932692.1    Uniprot ID   A0A641A2P1
Organism   Staphylococcus aureus strain IPLA15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2192985..2203380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RL453_RS10625 (RL453_10610) - 2194244..2194648 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  RL453_RS10630 (RL453_10615) - 2194986..2195078 (+) 93 WP_031864518.1 hypothetical protein -
  RL453_RS10635 (RL453_10620) - 2195210..2195443 (+) 234 WP_000384523.1 DUF1146 family protein -
  RL453_RS10640 (RL453_10625) murA 2195554..2196819 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  RL453_RS10645 (RL453_10630) fabZ 2196853..2197293 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  RL453_RS10650 (RL453_10635) - 2197351..2197791 (-) 441 WP_000846746.1 YwpF-like family protein -
  RL453_RS10655 (RL453_10640) ssb 2197985..2198380 (+) 396 WP_000932692.1 single-stranded DNA-binding protein Machinery gene
  RL453_RS10660 (RL453_10645) sceD 2198769..2199464 (+) 696 WP_000752008.1 lytic transglycosylase SceD -
  RL453_RS10665 (RL453_10650) tenA 2199988..2200677 (+) 690 WP_000396077.1 thiaminase II -
  RL453_RS10670 (RL453_10655) thiD 2200670..2201500 (+) 831 WP_331386328.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  RL453_RS10675 (RL453_10660) thiM 2201484..2202284 (+) 801 WP_001108492.1 hydroxyethylthiazole kinase -
  RL453_RS10680 (RL453_10665) thiE 2202277..2202918 (+) 642 WP_000483155.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15114.16 Da        Isoelectric Point: 5.2452

>NTDB_id=882401 RL453_RS10655 WP_000932692.1 2197985..2198380(+) (ssb) [Staphylococcus aureus strain IPLA15]
MLNKIVIVERLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=882401 RL453_RS10655 WP_000932692.1 2197985..2198380(+) (ssb) [Staphylococcus aureus strain IPLA15]
ATGCTAAATAAAATCGTAATTGTCGAGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A641A2P1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus MW2

100

100

1
  ssb Staphylococcus aureus N315

99.237

100

0.992