Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RL451_RS13110 Genome accession   NZ_CP134617
Coordinates   2645198..2645593 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IPLA16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2640198..2650593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RL451_RS13080 (RL451_13080) - 2641456..2641860 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  RL451_RS13085 (RL451_13085) - 2642198..2642290 (+) 93 WP_001790611.1 hypothetical protein -
  RL451_RS13090 (RL451_13090) - 2642422..2642655 (+) 234 WP_000384523.1 DUF1146 family protein -
  RL451_RS13095 (RL451_13095) murA 2642766..2644031 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  RL451_RS13100 (RL451_13100) fabZ 2644065..2644505 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  RL451_RS13105 (RL451_13105) - 2644564..2645004 (-) 441 WP_000846746.1 YwpF-like family protein -
  RL451_RS13110 (RL451_13110) ssb 2645198..2645593 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  RL451_RS13115 (RL451_13115) sceD 2645982..2646677 (+) 696 WP_000752001.1 lytic transglycosylase SceD -
  RL451_RS13120 (RL451_13120) tenA 2647201..2647890 (+) 690 WP_000396073.1 thiaminase II -
  RL451_RS13125 (RL451_13125) thiD 2647883..2648713 (+) 831 WP_000594960.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  RL451_RS13130 (RL451_13130) thiM 2648697..2649488 (+) 792 WP_001108480.1 hydroxyethylthiazole kinase -
  RL451_RS13135 (RL451_13135) thiE 2649490..2650131 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=882376 RL451_RS13110 WP_000932694.1 2645198..2645593(+) (ssb) [Staphylococcus aureus strain IPLA16]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=882376 RL451_RS13110 WP_000932694.1 2645198..2645593(+) (ssb) [Staphylococcus aureus strain IPLA16]
ATGCTAAATAAAATCGTAATTGTTGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992