Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   RL451_RS05195 Genome accession   NZ_CP134617
Coordinates   1039854..1040840 (-) Length   328 a.a.
NCBI ID   WP_278198157.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IPLA16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1034854..1045840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RL451_RS05170 (RL451_05170) - 1035113..1035460 (-) 348 WP_001242102.1 hypothetical protein -
  RL451_RS05175 (RL451_05175) - 1035646..1036239 (+) 594 WP_000224622.1 CYTH domain-containing protein -
  RL451_RS05180 (RL451_05180) - 1036343..1036708 (+) 366 WP_000214068.1 truncated hemoglobin YjbI -
  RL451_RS05185 (RL451_05185) yjbH 1036731..1037537 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  RL451_RS05190 (RL451_05190) pepF 1037998..1039806 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  RL451_RS05195 (RL451_05195) coiA 1039854..1040840 (-) 987 WP_278198157.1 competence protein CoiA Machinery gene
  RL451_RS05200 (RL451_05200) mecA 1040961..1041680 (-) 720 WP_001217728.1 adaptor protein MecA -
  RL451_RS05205 (RL451_05205) spxA 1042051..1042446 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  RL451_RS05210 (RL451_05210) trpS 1042741..1043730 (+) 990 WP_000448934.1 tryptophan--tRNA ligase -
  RL451_RS05215 (RL451_05215) opp4C 1043772..1044653 (-) 882 WP_331385848.1 oligopeptide ABC transporter permease -
  RL451_RS05220 (RL451_05220) opp4B 1044665..1045627 (-) 963 WP_000239820.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38829.43 Da        Isoelectric Point: 9.6572

>NTDB_id=882359 RL451_RS05195 WP_278198157.1 1039854..1040840(-) (coiA) [Staphylococcus aureus strain IPLA16]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSLFINPFTRKL
RTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVGLESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=882359 RL451_RS05195 WP_278198157.1 1039854..1040840(-) (coiA) [Staphylococcus aureus strain IPLA16]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTTTATTTATTAATCCATTCACTCGAAAACTT
CGTACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGGTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.476

100

0.985
  coiA Staphylococcus aureus N315

97.866

100

0.979