Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   RL451_RS02115 Genome accession   NZ_CP134617
Coordinates   389847..390533 (+) Length   228 a.a.
NCBI ID   WP_001837962.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IPLA16     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 384847..395533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RL451_RS02080 (RL451_02080) yqeH 385374..386474 (+) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -
  RL451_RS02085 (RL451_02085) aroE 386488..387294 (+) 807 WP_000666761.1 shikimate dehydrogenase -
  RL451_RS02090 (RL451_02090) yhbY 387298..387588 (+) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  RL451_RS02095 (RL451_02095) nadD 387591..388160 (+) 570 WP_000725168.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  RL451_RS02100 (RL451_02100) yqeK 388150..388734 (+) 585 WP_001019322.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  RL451_RS02105 (RL451_02105) rsfS 388735..389088 (+) 354 WP_001088020.1 ribosome silencing factor -
  RL451_RS02110 (RL451_02110) - 389091..389807 (+) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  RL451_RS02115 (RL451_02115) comEA 389847..390533 (+) 687 WP_001837962.1 ComEA family DNA-binding protein Machinery gene
  RL451_RS02120 (RL451_02120) - 390625..391086 (+) 462 WP_000439691.1 ComE operon protein 2 -
  RL451_RS02125 (RL451_02125) comEC 391091..393292 (+) 2202 WP_001641560.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RL451_RS02130 (RL451_02130) holA 393349..394323 (+) 975 WP_001282561.1 DNA polymerase III subunit delta -
  RL451_RS02135 (RL451_02135) rpsT 394368..394619 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25861.57 Da        Isoelectric Point: 9.6751

>NTDB_id=882344 RL451_RS02115 WP_001837962.1 389847..390533(+) (comEA) [Staphylococcus aureus strain IPLA16]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=882344 RL451_RS02115 WP_001837962.1 389847..390533(+) (comEA) [Staphylococcus aureus strain IPLA16]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

99.559

99.561

0.991
  comEA Staphylococcus aureus MW2

97.797

99.561

0.974