Detailed information NTG0882199

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RKS75_RS01090
• Genome accession: NZ_CP134599
• Coordinates: 219971..220831 (-)
• Length: 286 a.a.
• NCBI ID: WP_001152285.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain XH1015
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 214971..225831

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RKS75_RS01065 (RKS75_01065)	-	215862..217172 (+)	1311	WP_000753294.1	tetratricopeptide repeat protein	-
RKS75_RS01070 (RKS75_01070)	-	217249..217575 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
RKS75_RS01075 (RKS75_01075)	rlmB	217677..218426 (+)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
RKS75_RS01080 (RKS75_01080)	-	218462..219376 (+)	915	WP_000075011.1	DMT family transporter	-
RKS75_RS01085 (RKS75_01085)	coaE	219373..219969 (-)	597	WP_000874125.1	dephospho-CoA kinase	-
RKS75_RS01090 (RKS75_01090)	pilD	219971..220831 (-)	861	WP_001152285.1	A24 family peptidase	Machinery gene
RKS75_RS01095 (RKS75_01095)	pilC	220831..222057 (-)	1227	WP_000279216.1	type II secretion system F family protein	Machinery gene
RKS75_RS01100 (RKS75_01100)	pilB	222087..223799 (-)	1713	WP_001274990.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RKS75_RS01105 (RKS75_01105)	tpiA	224091..224885 (+)	795	WP_000016939.1	triose-phosphate isomerase	-
RKS75_RS01110 (RKS75_01110)	secG	224898..225227 (+)	330	WP_000555572.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32153.54 Da
• Isoelectric Point: 7.1042

>NTDB_id=882199 RKS75_RS01090 WP_001152285.1 219971..220831(-) (pilD) [Acinetobacter baumannii strain XH1015]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHERLTLNKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLILTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
IGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=882199 RKS75_RS01090 WP_001152285.1 219971..220831(-) (pilD) [Acinetobacter baumannii strain XH1015]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCAATTATTGATCATGAGAGGTTAACTTTAAATAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGCCATTGCCAACACCCGATCAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTCATCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
ATTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.951	100	0.99
pilD	Acinetobacter nosocomialis M2	97.902	100	0.979
pilD	Vibrio cholerae strain A1552	52.941	95.105	0.503
pilD	Vibrio campbellii strain DS40M4	52.03	94.755	0.493
pilD	Neisseria gonorrhoeae MS11	48.485	92.308	0.448