Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AACG33_RS06030 Genome accession   NZ_CP151005
Coordinates   1224377..1225114 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 19KM1766N     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1219377..1230114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACG33_RS06000 yfiL 1219535..1219900 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  AACG33_RS06005 aroF 1220110..1221180 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  AACG33_RS06010 tyrA 1221191..1222312 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  AACG33_RS06015 pheA 1222355..1223515 (-) 1161 WP_000200101.1 bifunctional chorismate mutase/prephenate dehydratase -
  AACG33_RS06020 pheL 1223614..1223661 (-) 48 WP_001700969.1 pheA operon leader peptide PheL -
  AACG33_RS06025 raiA 1223765..1224106 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AACG33_RS06030 comL 1224377..1225114 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  AACG33_RS06035 rluD 1225249..1226229 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AACG33_RS06040 yfiH 1226226..1226957 (+) 732 WP_000040129.1 purine nucleoside phosphorylase YfiH -
  AACG33_RS06045 clpC 1227087..1229660 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=882158 AACG33_RS06030 WP_000197686.1 1224377..1225114(-) (comL) [Escherichia coli strain 19KM1766N]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=882158 AACG33_RS06030 WP_000197686.1 1224377..1225114(-) (comL) [Escherichia coli strain 19KM1766N]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376